| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1712 |
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| Symbol | |
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| ID | 4277491 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 2019974 |
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| End bp | 2020849 |
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| Gene Length | 876 bp |
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| Protein Length | 291 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 638134496 |
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| Product | MscS mechanosensitive ion channel |
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| Protein accession | YP_750400 |
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| Protein GI | 114562887 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3264] Small-conductance mechanosensitive channel |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATTTTA ATGAATTATT AACGTCTTTA TCGTTTGTGG TATTCACCTA CGATAAACAT
CAAATAACTT TATTGCAGCT GCTGCAAGTG CCTCTCTACA TATTTTTAGC GTGGTTTATT
ATTACTCGTG TTGGGCGATT GATTGTTAAA GCACTAAAGC GACGTAAAGT GGGCGCTGAT
GCCATTCACT TGTTCACTCG CATGTACTTT ATTATCAGTA TTGCGGTGTT GGTTTTCACC
AGTATGGAAA TTTTAAATAT TCCATTAACC GCTTTTGCAT TTGTGTCTGG TGCTATTGCT
ATTGGTGTTG GTTTTGGTGC CCAGAACATC ATCAATAACT TTATCAGTGG TTGGATTTTA
ATGTGGGAAC GCCCAATTAG AATCGGTGAC TTTTTAGAAG TTGGTGAAGC CCGTGGAGTT
GTAGAGTGTA TTAATACTCG CTCAACCTTG ATACGCCGTA ATGATGGAGT GCACATGTTG
GTTCCAAATA GCCAACTGCT TGAAAATACA GTGACCAATT GGACTTTGAT TGATAAAAAT
GCACGAACAT TTGTTCGTGT TGGTGTCGCT TACGGTTCGG ATGTGATTAA AGTTCGCGAG
CTGATTTATC AAGTTATTGC TGAACGGGAT GATATTTTGC CGCAACCTAA ACCCTCAGTC
TTATTTGAGG ACTTTGGCGA CAACGCATTG ATTTTTGACT TGATATTTTG GGTCAGCGCC
GTGTCAGAAA CAGATATCCG CCGCCGTCGT AGCGAAATTC GCTTTAGAAT GTACGAGCTA
TTCAATGAGA ATAATGTGTC TATAGCATAC CCTCAGCGCG ACTTGCATGT AGATGGACAT
TTGACGATAA CTCAAAGTCA TAAAAATCAG CTCTGA
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| Protein sequence | MDFNELLTSL SFVVFTYDKH QITLLQLLQV PLYIFLAWFI ITRVGRLIVK ALKRRKVGAD
AIHLFTRMYF IISIAVLVFT SMEILNIPLT AFAFVSGAIA IGVGFGAQNI INNFISGWIL
MWERPIRIGD FLEVGEARGV VECINTRSTL IRRNDGVHML VPNSQLLENT VTNWTLIDKN
ARTFVRVGVA YGSDVIKVRE LIYQVIAERD DILPQPKPSV LFEDFGDNAL IFDLIFWVSA
VSETDIRRRR SEIRFRMYEL FNENNVSIAY PQRDLHVDGH LTITQSHKNQ L
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