| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1623 |
|---|
| Symbol | |
|---|
| ID | 4277282 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 1932554 |
|---|
| End bp | 1933243 |
|---|
| Gene Length | 690 bp |
|---|
| Protein Length | 229 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638134408 |
|---|
| Product | two component transcriptional regulator, winged helix family protein |
|---|
| Protein accession | YP_750312 |
|---|
| Protein GI | 114562799 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.314496 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGAA TTGCCATTGT TGAAGACGAA GCCGCTATCC GCGAAAATTA CAAAGATGTC
CTGCAACAGC AAGGTTATAG TGTTCAAGCC TATGCAAATC GCCCCGCAGC CATGCTCGCC
TTTAATGCTC GCTTACCAGA CCTAGCCATT ATTGATATTG GTTTAGAGCA TGAAATAGAC
GGCGGTTTTA CCCTATGCCA GGCACTGCGT GCAATGTCGA GCAGCCTACC AATCATCTTT
TTAACCGCAC GCGACAGTGA CTTTGACACC GTGTGTGGTC TGCGTTTAGG GGCCGATGAT
TATTTAACAA AAGAAGTCAG TTTCCCCCAT TTAATGGCCC GTATTGCGGC CCTATTTCGT
CGTTCAGAAT TAATCGGTTC AAGCCCAATA GAAGACAACT TACTTGAGCG CGGCCACCTC
ACAATCGATG GCAATCGCAT TCAGGTATAT TGGAAATCGC AACCCATTGA ACTGACCGTG
ACCGAGTTTT GGATGGTTCA TGCCATGGCC AAACATCCAG GACATGTGCG CAGCCGTCAG
GATTTAATGC AAGAAGCTAA AATTTACGTC GACGACAGCA CAATCACCTC GCACGTTAAG
CGCATTAGGA AAAAGTTTAT CGTTATCGAC GCTGAGTTTG ACTGTATCGA TACCGTTTAT
GGCATGGGCT ACCGCTGGGA CAATATCTAA
|
|---|
| Protein sequence | MKRIAIVEDE AAIRENYKDV LQQQGYSVQA YANRPAAMLA FNARLPDLAI IDIGLEHEID
GGFTLCQALR AMSSSLPIIF LTARDSDFDT VCGLRLGADD YLTKEVSFPH LMARIAALFR
RSELIGSSPI EDNLLERGHL TIDGNRIQVY WKSQPIELTV TEFWMVHAMA KHPGHVRSRQ
DLMQEAKIYV DDSTITSHVK RIRKKFIVID AEFDCIDTVY GMGYRWDNI
|
|---|
| |