| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1388 |
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| Symbol | |
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| ID | 4277011 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 1652033 |
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| End bp | 1653391 |
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| Gene Length | 1359 bp |
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| Protein Length | 452 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 638134162 |
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| Product | O-antigen polymerase |
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| Protein accession | YP_750078 |
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| Protein GI | 114562565 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3307] Lipid A core - O-antigen ligase and related enzymes |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATATCA GGAGCCCCCA CACAATAAAA TCTTTTGGGT TCTTTAATCG TTTTATGCTG
TTGGGGCTAT GTGCGCTGAT TATTTGGATG CCTATCCCAT TAGGTAGTAA TCGTATTTGG
TCGTTAGCTA TTTTAGAGTT GTGTATTGTA TTACTTGGCG TTGTGCACAT AGGCTACTGC
ATTAAGCAAA ATGCGTTATT GTTACGTTAT CATTGGCAAA AGTATGCATT AATCCCCATT
GGATTAATGC TAGTTTATTT ATGCTTACAA TTACTTAACT GGATCCCTGT AATTAATACA
GTTGATGGCT ATCAAACGGC ACAACAACTT TTAAAAACCT TCTGTTATGG CGTGTTTATT
TTATTGTTAA GTCAATATTG TCAGAGTTCA CAGGCGATTC GTTGGCTGTT AATTGCCATT
ATATTATCTG GTTGTTTACA GGCCTTTTAT GGCACCTTGC TGAATTTGTT GCAACTGGAT
GTATCACCTG TATTTGGTTA TTCCGATGGC GATAGGGCCC GTGGATCGTT TGTGTACCAA
AATCATTTTG CTAATTATTT AGCATTATGT CTTTCTATTG CGTTTGGTTG GCTGTTATCC
GAGCTAAAAA CCAGCAAGAA AGAGTTCGAT TTGCGTGCAA TGATTATTGA CTTACTATCG
ACATTATTCA GTCGAAAACT GATCCTTCGC TTAGCCATTG TGATTATGGT GATAGGCTTA
ATCTTAAGTC GCTCACGAAT GGGCAACGCT GGCTTCTTTA CTGCACTGGG TGTTGTATCA
CTATTGTCGA TGTTTATTTA TCGTCGACCG CCAACGTTAT TTAAGCCTTT AGTACTGAGT
ATTTTCATTC TTGATTTGCT CATTGTCGGC TCAATTTTTG GGGTCGATAA ACTAAAACAG
CGTTTAGACG ATACCTCTTT TAGTTCAGAA ACTCGTGATG AAGTGGTAAT GGATAGTCTT
CCCATCATCC AAGAACACTT GTTCACGGGT ACTGGGGGAG GGAGTTTCTA TACTGTTTTC
CCACAATACC AACCTCAGTT TTATTCTGGT TTTTATGACC ATGCCCATAA CGAATATATT
CAGTTTGTTG TTGAGTATGG GATTGTAATG ACAGCCATTT TAGGCTTATG GGTGTTGTAC
GCGTTTTGGT TAGCGTGTCG AACCATGTAT TTGCGTAATA ATAAACTTTA TAAAGGGGTC
GCTTTTGGTT GTGCAATGGC CATAGTGCAC ATGCTATTGC ATATTTCTGT TGATTTTAAT
CTGCAATCAC CTTCGAACAC TTTACTGTTT TTAACCATCT TAACCCTATG CTGGTTAGTG
CGTTATTTAC CTGCTGATAC TCACAAAATA GCAAGATAA
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| Protein sequence | MDIRSPHTIK SFGFFNRFML LGLCALIIWM PIPLGSNRIW SLAILELCIV LLGVVHIGYC
IKQNALLLRY HWQKYALIPI GLMLVYLCLQ LLNWIPVINT VDGYQTAQQL LKTFCYGVFI
LLLSQYCQSS QAIRWLLIAI ILSGCLQAFY GTLLNLLQLD VSPVFGYSDG DRARGSFVYQ
NHFANYLALC LSIAFGWLLS ELKTSKKEFD LRAMIIDLLS TLFSRKLILR LAIVIMVIGL
ILSRSRMGNA GFFTALGVVS LLSMFIYRRP PTLFKPLVLS IFILDLLIVG SIFGVDKLKQ
RLDDTSFSSE TRDEVVMDSL PIIQEHLFTG TGGGSFYTVF PQYQPQFYSG FYDHAHNEYI
QFVVEYGIVM TAILGLWVLY AFWLACRTMY LRNNKLYKGV AFGCAMAIVH MLLHISVDFN
LQSPSNTLLF LTILTLCWLV RYLPADTHKI AR
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