Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_0897 |
Symbol | |
ID | 4276994 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 1055324 |
End bp | 1056583 |
Gene Length | 1260 bp |
Protein Length | 419 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638133663 |
Product | RND family efflux transporter MFP subunit |
Protein accession | YP_749588 |
Protein GI | 114562075 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGATTAAAG ACACAAGTAG CCAAGATACT GTTATTGCGC CTAAGTTAGG CCGTAAATTG CGCTTACCCT TGATGATAGG TTGCGGTGCA ATTTTGATGA GCGCGTTGGT GTGGGCGAGT TTAAGTCGTG ACAGTAATCA ACGTTCGGTT GATGGTGCAG ATTTACGTTT GGCAACCTTA ACCCGTGGCA CGTTGGTGCG TGATATTGCC ACTACCGGTA AAATTGTGGC GGCCAATGCG CCCATTTTAT ATAGCACGGA AGAAGGTGTG GTGACGCTAT TAAGTCAACC TGGTGATGAA GTTGAGCTGG GGCAAGTGGT GGCCAAGATT GAAAGCCCGC GTTTACAAAG TGAATTGCAA CAACAGCAGT CGATGCTTGA AGGGATGCAA GGTAGTTTAG AGCGCGCCAA GTTAGATGCA CGCCGTGAGC AATTGCGCGT TAGCCAGATT TTAGACATGG CGAAAGTCGA TTTAGAAGCC GCAGATCGTG AAAGCCGTCG TGGTGATCAA TTGATTGAGT CGAGTTTGAT CAGCAAAATC GATTTTGAAA AAAGCAAAGA TGATTTACAT AAAGCCAAAT TATTGCATAA GCATGCCCAG CAAGAAGTGG AGCTTATGCG CGATACCCTC AGTTTTGAAA TTAAAAACCG TACCCTTGAA GTACAACGCC AGGCTCTAGT GGTGAGAGAG TTAACTCGTC AAGCCAATGC CTTGAGTATT ATCGCGCCAG TTAGCGGCAT TATTGGTAAC TGGTTGGTGG AGCAAAAAGC CCGTATTGCC GCCAGCCAAC CAATATTAAC TGTGGTCGAT TTATCTGCTT TTGAAGCTGA GTTAGCTGTG CCAGAGTCTT ATGCTGATGA GTTAGGTTTA GGGATGGATG TTGAGTTGAG TTTTGGCAAC GTTAATGTGG TTGGCCAATT GTCGTCAATT TCACCCGAAG TACGTAATCG TGAAGTGACC GCCCGGGTGC GTTTTGCTGA CAGTAACACT TTATCGTTAC GTCAAAATCA GCGTTTGTCT GCCCGAGTAT TACTGGAAAA CAGACCCAAC GTGTTGATAG TGAAACGCGG TGATTTTCTC AATATGGGCG GCGAAGTGGC GTATCAAGTG AGTGACGCTG TTGCTCATAA GAAAGTCGTT AAATTGGGCG CACGCAGTAT GAGCCAAGTT GAAGTGCTTG AAGGCGGTGA AGCCGGTGAC GTATGGGTGA TATCTGGTAC CGAAACCTTT AAAAATGATC CAACAATTCA AATCCGATAG
|
Protein sequence | MIKDTSSQDT VIAPKLGRKL RLPLMIGCGA ILMSALVWAS LSRDSNQRSV DGADLRLATL TRGTLVRDIA TTGKIVAANA PILYSTEEGV VTLLSQPGDE VELGQVVAKI ESPRLQSELQ QQQSMLEGMQ GSLERAKLDA RREQLRVSQI LDMAKVDLEA ADRESRRGDQ LIESSLISKI DFEKSKDDLH KAKLLHKHAQ QEVELMRDTL SFEIKNRTLE VQRQALVVRE LTRQANALSI IAPVSGIIGN WLVEQKARIA ASQPILTVVD LSAFEAELAV PESYADELGL GMDVELSFGN VNVVGQLSSI SPEVRNREVT ARVRFADSNT LSLRQNQRLS ARVLLENRPN VLIVKRGDFL NMGGEVAYQV SDAVAHKKVV KLGARSMSQV EVLEGGEAGD VWVISGTETF KNDPTIQIR
|
| |