Gene SeD_B0078 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_B0078 
Symbol 
ID6870822 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011204 
Strand+ 
Start bp43658 
End bp44320 
Gene Length663 bp 
Protein Length220 aa 
Translation table11 
GC content48% 
IMG OID642783218 
ProductTnpR 
Protein accessionYP_002213912 
Protein GI198241673 
COG category[L] Replication, recombination and repair 
COG ID[COG1961] Site-specific recombinases, DNA invertase Pin homologs 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones95 
Fosmid unclonability p-value0.569126 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAACCGGT TCTGTAATAT GACTTCAAAT GTACCAACAA GCTTTGTCCG CGCTTATCTG 
AGAGCTTCAA CAGCAGAACA GGATGCTTCG CGTGCCCTGG AAACTATCGA GGCTTTTGCC 
AGGGAAAGAG GCCTGATCAT TTGCAGCTAC TATATTGAGA ATGAATCCGG CACCCGTCTT 
GAGCGCCCGG AACTTTTTCG TCTTCTGAGA GATTGCCAAC AAAATGACAT TTTGCTTATC 
GAGGATGTGG ACAGACTTTC CCGCCTGTCA GGGGAAGACT GGAATACGTT GAAGAAAATG 
ATCCGGCAGA AAGACATCCG GGTTATGGCG GTGAATGTGC CGACGACATG GATTAATTCT 
GGTATGAGTG AGTTTGACAG CCGGTTGTTT GCAGCCATTA ACGATATGCT GCTGGATATG 
CTGGCCGCAG TTGCCAGAAG GGACTATGAA CAACGTCGGG AACGCCAGAA ACAAGGGATA 
GAGAAAGCAA GGAAAGACGG CAAATATAAA GGGCGTAAAC CTAATCAAGC CAGACATGAT 
GCAATTATCA GGTTGATAGA AAGCGGTAGC TCCTGGACAC AGGTACAGAA AGTGCTAGGG 
TGCAGCCGTG GCACAATCAG TAATGCGCTA AAACGTAAAA CCGGGCAGAA ATCCAGTAAG 
TAG
 
Protein sequence
MNRFCNMTSN VPTSFVRAYL RASTAEQDAS RALETIEAFA RERGLIICSY YIENESGTRL 
ERPELFRLLR DCQQNDILLI EDVDRLSRLS GEDWNTLKKM IRQKDIRVMA VNVPTTWINS 
GMSEFDSRLF AAINDMLLDM LAAVARRDYE QRRERQKQGI EKARKDGKYK GRKPNQARHD 
AIIRLIESGS SWTQVQKVLG CSRGTISNAL KRKTGQKSSK