Gene SeD_B0013 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_B0013 
Symbol 
ID6870864 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011204 
Strand
Start bp6799 
End bp8463 
Gene Length1665 bp 
Protein Length554 aa 
Translation table11 
GC content56% 
IMG OID642783166 
Productintegrase, catalytic region 
Protein accessionYP_002213860 
Protein GI198241725 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.581466 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones100 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCAGCC GGCGTAGCGC GATTCCGTCT GACTCCCTGT TGCAACTACG GCAACGGCTC 
GATCGCCTGC CGCCAAAAAG CCCTGAACGT GCCAATCAGA TTGCCGCTAC CGCCCAGCTG
TATGGTATTT CAGTCACGAC GGTTTATCGC GCTCTTCACC TTGTTTTGAA ACCGCGAACG
GCCCACCGCA GTGATCATGG TCAACCCCGG ATACTGCCAC CGTCCGAGCT GGAGCATTAC
TGCGAACTGA TTGCTGCACT GAAATTACGA ACCACAAATA AATCCGGCCG CCATCTGTCG
ACCGGACGGG CAATACAGCT GCTGGAAGAG CATGGCGTGG AGACGGTCCA GGGATTGATT
AAAAGTCCCA AAGGCTTACT TCGTAAGCAG ACCGTCAATC GCTGGCTTTC CCGCTGGCGT
CTCGACCAGC CCCGCCTGTT ACGGGAGCCT CCGGCGGTAA GATTTCAGGC TGAAAACAGC
AATGACTGTT GGCAGTTTGA TATGTCGCCA TCCGATCTCA AACATATTGA GCGGCCTGAC
TGGGTAGATC CTGCCCGGGG CGAACCCACG CTGATGCTGT TCAGCGTAGT GGATGACCGG
AGCGGTGTCG CATACCAGGA ATACCGGTGT GTGTACGGTG AGGATGCGGA ATCTGCGCTG
CGTTTTCTCT TTAACGCCAT GGCCCCAAAA ACCAGGTCTG ATTTTCCTTT TCAGGGCCGC
CCGAAATTGC TGTACCTCGA TAATGGACCG GTGGCCAAAA ACCATGTATT CCAGAATGTG
ATGCAGTCCC TGAAGGTTGA CTGGCTGACG CATACGCCGG CAGGCAAGGA CGGCACCCGG
ACGACGGCAC GGTCCAAAGG TAAAGTTGAA CGTCCTTTCC GGACCGTCAA GGAGGCACAT
GAAACTCTGT ACCATTTCCA TAAACCGGAA ACGGAGCTGC AGGCCAACGA ATGGCTCTGG
AACTATCTGA GCCGTTATAA CGCGCAGCGT CACCGCAGCG AGAAACACTC CCGACTGGAG
GACTGGCTGG CAAATATCGG CCAGGAAGGT GTGAGGGATA TGTGCAGCTG GGAACAATAC
TGTCGGTTCG CCCGGGAGCC GGAATCCCGC AAGGTGGGTG TTGATGCGCG GATAACGATA
GACGGCACCG CATGGGAAGT TGAACCGGAT ATGGCGGGTG AAACCGTCAT TCTGCTGTGG
GGGCTGTTTG ACGAAGAGAT GTATGTGGAG TTTACCGGTG AAACATGGGG GCCTTATTAT
CCGGTGTCGG GGCCTGTGCC GCTGCACCGT TACCGGACGT TCAGACGCGG TAAAGCGGCT
GAACGGGCCG ATCGTATCCA TGCTCTGGCC AGGCAGCTGA ACATCCCCAT CAGCGCATTG
TCCGGCAGCG ATCTCCGCGT GGTCAGTGAT GACACTCAGC AGCGCATTGA TGCGTTGCCA
CATCAGCCCT TTGATACCCG AAAATTTGAA TACCACTTTC CCACCGTTAT TGCGGCAAAA
CTGGCAATTG CCGACGATCT GGCCATACCG CTGGCCAGAA TGTCGGATGA AGACCGGGCG
TTTATCGACA GTATTCTGAC TGAGACGCTT AACCGTAGTG AAGTACTCGC CCGCATCAGA
GACTATTTTC GTAGCAGACA ATCAGGAGAG GACCATGCGG GTTGA
 
Protein sequence
MSSRRSAIPS DSLLQLRQRL DRLPPKSPER ANQIAATAQL YGISVTTVYR ALHLVLKPRT 
AHRSDHGQPR ILPPSELEHY CELIAALKLR TTNKSGRHLS TGRAIQLLEE HGVETVQGLI
KSPKGLLRKQ TVNRWLSRWR LDQPRLLREP PAVRFQAENS NDCWQFDMSP SDLKHIERPD
WVDPARGEPT LMLFSVVDDR SGVAYQEYRC VYGEDAESAL RFLFNAMAPK TRSDFPFQGR
PKLLYLDNGP VAKNHVFQNV MQSLKVDWLT HTPAGKDGTR TTARSKGKVE RPFRTVKEAH
ETLYHFHKPE TELQANEWLW NYLSRYNAQR HRSEKHSRLE DWLANIGQEG VRDMCSWEQY
CRFAREPESR KVGVDARITI DGTAWEVEPD MAGETVILLW GLFDEEMYVE FTGETWGPYY
PVSGPVPLHR YRTFRRGKAA ERADRIHALA RQLNIPISAL SGSDLRVVSD DTQQRIDALP
HQPFDTRKFE YHFPTVIAAK LAIADDLAIP LARMSDEDRA FIDSILTETL NRSEVLARIR
DYFRSRQSGE DHAG