| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A4828 |
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| Symbol | |
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| ID | 6874566 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011205 |
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| Strand | + |
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| Start bp | 4681806 |
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| End bp | 4683719 |
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| Gene Length | 1914 bp |
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| Protein Length | 637 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 642787717 |
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| Product | HTH domain-containing protein |
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| Protein accession | YP_002218311 |
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| Protein GI | 198245784 |
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| COG category | [G] Carbohydrate transport and metabolism
[K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG1762] Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type)
[COG3711] Transcriptional antiterminator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 73 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCGATTCC CCAACCAACG TTTAGCGCAG CTATTTGCGA TGCTGCAAAA CGAGACGCTG
CCGCAGGATG AGCTGGCGCA GCGGTTGTCG GTCTCCACGC GTACCGTTCG GGCGGATATC
GCCGCGCTGA ACATGTTGCT GACGCCGCAT GGCGCGCAAT TTACTCTCAG CCGCGGCAAC
GGGTATCAGC TCAAAATTGA TGATCCGGCA CGTTATCAAT CCCTGCAAAC GCAGCAATCT
CCCGCCCTGG CGCGCGGTCC GCGCACCAGC CAGGAGCGGA TACACTATTT GCTGGCGCGT
TTTTTAACCT CCGCCTTCTC GCTGAAGCTG GAGGATTTAG CAGATGAATG GTTTGTCAGC
CGTGCGACGT TGCAGAACGA CATGGCGGAC GTGCGCGAGC ATTTGCTGCG TTATCATCTG
ACGCTGGAAA CGCGTCCGCG TCATGGCATG AAATTGTTTG GCGGAGAGAT GGCGATTCGC
GCCTGTCTGA CCGACCTTTT ATGGACGCTG GCGCAGCAGG AGCCCTCTCA TCCGTTAATT
GTTAGTACCA CGCTGAACAC CGAGGTGTCT CAACGGCTGC GGTCTCTTTT GCCGGATATT
TTCTCTCATT GTCAAATCCG CCTGACCGAT GAGGGCGAGC TGTTTCTACG TTTATACTGC
GCGGTGGCGG TACGGCGTAT TCGCGAGGGG TATCCGTTAT CGGAATGTGT GGCGGAGGAG
GTTGATGAAA AGGTGCGCCA TGCGGCGCAT GAGATTGCGG AGCTACTACA ACAGCTGGCC
GACAAGCCGC TGTCGGAGCC GGAAGTAAGC TGGCTGAAGG TGCATATTGC CGCCCGCCAG
GTACAGGAGA TTGCCCCCAG CGCCATTAAT GCCGATGATG AAGAGGCGCT GGTGCGCTAT
ATCCTCAATT TTATTAATAC CCAGTACAAC TATAACCTGT TGAATGATAA ACAGCTTCAC
GCGGACTTGC TGACCCACAT CAAAACGATG ATCACCCGCG TGCGCTACCA GATCATGATC
CCCAACCCAC TACTGGAAAA TATTAAGCAG CACTATCCGA TGGCGTGGGA TATGACGTTG
GCGGCGATAT CGAGTTGGGG AAAATACACG CCGTATACCA TTAGCGAAAA CGAAATCGGT
TTTCTGGTGC TGCATATTGG CGTTGGGCTG GAACGTAGTT ACAACATTGG CTACCAGCGG
CAGCCGCAGG TACTGTTGGT GTGCGATGCT GGTAATGCGA TGGTGCGGAT GATTGAAGCG
GTACTGGCGC GGAAATACCC GCAGATTGAG ATTGCCCGCA CTCTGACGCT ACGCGACTAT
GAGGCGCGGG ACAGTATTGT GGAGGATTTT GTGATTTCCA CGGCGCGGAT CGGTGAAAAA
GATAAGCCGG TCATCATGAT CGCACCCTTT CCTACCGACT ATCAATTGGA GCAGATCGGT
AAGCTGGTGC TGGTGGACAG AACGCGCCCG TGGATGCTGG ATAAATATTT CGATGCCTCG
CATTTTCGCA TCGTGGAGGG GGAAATAGAT CAACAGACGC TGTTTAAAAC GCTGTGCGAT
CAGTTGCATG AGGAAGGCTT TGTTGATGCG GCGTTTCTCG ATTCGGTTAT TGAACGTGAA
GCTATCGTCA GTACGTTATT AGGCGACGGG ATTGCCTTGC CACACGCGCT GGGGCTGCTG
GCGAAGAAAA CGGTGGTTTA TACGGTGCTC GCGCCACAGG GGATTGCCTG GGGTGACGAA
ACGGCGCACG TTATTTTTTT ACTCGCCATC AGCAAAAGTG AATATGAAGA GGCGATGGCC
ATCTACGATA TTTTCGTCAC TTTCCTGCGC GAACGCGCCA TGACGCGCCT CTGCGCATGT
CAGAATTTTA CGCAATTTAA AACGGTCGCG ATGGAGTGCG TGAGTCGTTT TTGA
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| Protein sequence | MRFPNQRLAQ LFAMLQNETL PQDELAQRLS VSTRTVRADI AALNMLLTPH GAQFTLSRGN
GYQLKIDDPA RYQSLQTQQS PALARGPRTS QERIHYLLAR FLTSAFSLKL EDLADEWFVS
RATLQNDMAD VREHLLRYHL TLETRPRHGM KLFGGEMAIR ACLTDLLWTL AQQEPSHPLI
VSTTLNTEVS QRLRSLLPDI FSHCQIRLTD EGELFLRLYC AVAVRRIREG YPLSECVAEE
VDEKVRHAAH EIAELLQQLA DKPLSEPEVS WLKVHIAARQ VQEIAPSAIN ADDEEALVRY
ILNFINTQYN YNLLNDKQLH ADLLTHIKTM ITRVRYQIMI PNPLLENIKQ HYPMAWDMTL
AAISSWGKYT PYTISENEIG FLVLHIGVGL ERSYNIGYQR QPQVLLVCDA GNAMVRMIEA
VLARKYPQIE IARTLTLRDY EARDSIVEDF VISTARIGEK DKPVIMIAPF PTDYQLEQIG
KLVLVDRTRP WMLDKYFDAS HFRIVEGEID QQTLFKTLCD QLHEEGFVDA AFLDSVIERE
AIVSTLLGDG IALPHALGLL AKKTVVYTVL APQGIAWGDE TAHVIFLLAI SKSEYEEAMA
IYDIFVTFLR ERAMTRLCAC QNFTQFKTVA MECVSRF
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