| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A1235 |
|---|
| Symbol | |
|---|
| ID | 6871511 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011205 |
|---|
| Strand | + |
|---|
| Start bp | 1229589 |
|---|
| End bp | 1233806 |
|---|
| Gene Length | 4218 bp |
|---|
| Protein Length | 1405 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 642784414 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002215087 |
|---|
| Protein GI | 198245895 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3209] Rhs family protein |
|---|
| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 57 |
|---|
| Fosmid unclonability p-value | 0.617923 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGGAA AACCAGCGGC GCGTCAGGGC GACATGACCC AGGTGGGCGG CCCGATAGTT
CAGGGTTCAG CGGGGGTACT GATAGGCGCA CCGACGGGGG TGGCGTGCTC GGTGTGCCCA
ACCGGAGAGG CCAGTCCGAA GTACGGCAAT CCGGTGAACC CGCTGCTGGG GGCGAAGGTC
CTGCCCGGCG AGACCGATAT TGCGCTGCCC GGCCCGCTGC CGTTCGTGCT TTCCCGCGCC
TACAGCAGTT ACCGGACGAA GACGCCCGCG CCGGTGGGGC TGTGCGGGCC GGGCTGGAAG
CTGCCGTCAG ACCTGTGGTT ACAGCTGCGC GGCGACGGGC TGATACTGAA CGATAACGGG
GGCAGGAGCG TGCATTTTGA GCCTCTGGCG CCGGGGGAGA TACAGTACAG CCGCAGCGAG
TCATTCTGGC TGGCGCGGGG CGGGGCGGCA TCGCAGCACA ACAGCCACCC GCTGTCGGTC
ATGTGGGGCA TGCTGCCGGA GGCGGTGCGG CTGTGCCCGC ATATTTACCT GGCGACGAAC
AGCCCGCAGG GGCCGTGGTG GGTGCTGGGA TGGGCTGAAC GGGTGCCGGG GGCGGATGAG
GCGCTGCCCG CGCCGCTGCC GCCGTACCGG GTGCTGACGG GGGTGGTGGA CGGTTATGGC
CGCCGTCTGA CGTACCATCG CGACGGTGCA TACGGCGGCG CGGTGACGGC GGTGACGGAC
AGCACCGGGC GGCGCTACCG GCTGGTGCTG ACCACGCAGG CGCAGCGCGC GGCGCAGGCG
GCGTCAGCGT CTTCTTCGTC ATTATCTCCC GCCCCGTCGT CGTTCCCTTC ATTTTCTTCC
CCACCCTCTC CCCGCTCACC GTCCTCCTGG TCGGAGACGC TGCCTGTAAC CGCCTGCGGT
GAGGACAGCG GCATCAGGCT GTCGGCGGTG TGGCTGGTGG AAGACCCGGC CTGTCCGGAT
GCGCTGCCGT CGCAGCCGCT GGTGCGTTAC GGGTACACGG CGCGCGGTGA GCTGGAGGCG
GTGTATGACC GCAGCGGTGC GGAGGTAAGG CGCTTTGAGT ATGACGCCGG GCAGCCGGGG
AGGATGACGG CGCACCGTTA CGCGGGAAGA CCGGCGAGCC GCTACCGGTA TGATGACGCG
GGGCGGGTGA CGGAGCAGGT CAACCCGGAA GGGCTGGGTT ATGCGTTCGC GTATGAGAAG
AACAAAATAA CGGTAACGGA CAGCCTGGGG CGGCGTGAAG TGCTGCACAC GGAAGGCGAG
GGTGGCCTGA AACGGGTGGT GATGAAGGCG TCAGCCGACG GGAGCGTGAC GCGCAGTAGA
TATGATGCGT CGGGAAGGCC AGAGTGGCAG ACGGATGCGA CGGGGAGGAA GACGACATAC
AGCCCGGACG TGGCGACAGG GAAGCTGACG GCGGTGACGG GGCCGGACGG GAGAAAGACG
AAGTACAGTT ATAACGATCG GCAGCAACTG ACGACGACGG TGTACCCGGA CGGGCTGCGA
AGCACGCGGG AGTATGATGA GCGTGGCAGG CTGACGGCGG AGACATCGCG TACCGGTGAG
ACGACGCGGT ACAGCTATGA TAATCCGCAG AGTGAATTAC CGTCCGGGAT ACATGACGCC
ACCGGCAGCA GTAAGACGAT GCGCTGGAAC CGCTACGGGC AGATGGTGGC GTTCACGGAC
TGTTCGGGGT ATGAGACGAA GTATGAATAT GACCGGTTCG GCCAGATGAC GGCGGTACAC
CGGGAGGAAG GGCAGAGCAT CTACCGCAGC TATAACCGCC GGGGACAGTT AACTGCCGTC
AGGGACAGCC AGGGCCGTGA AACCCGCTAC GATTATAACG ATGCAGGCGA CCTTATCACT
GTGACCGGCC CGGACGGAAA CCGCACTGAA ACGCAGTACG ACGGGTGGGG CAAGGCGCTC
AGTACCACAC AGGGCGGGCT GACGCGGCGG ATGGAATATG ATGCTGCTGG CCGTGTGACG
CAACTGACCA ACGAGAACGG CAGCCACAGC GCATTTACCT GGGATACGCT GGACCGCCTG
ACACAACAGA CGGGCTTTGA CGGACGGGTG CAGCGGTACG GTTACGACCT GACGGGAAAA
CTCACACAGA GTGAAGATGA GGACCTGGTC ACGCACTGGC ACTACGATGC GTCAGACCGG
CTGACGCACC GTACCGTCAA CGGCCTGGAG GCCGAACGCT GGCAGTATGA CGAACACGGG
TGGCTGACAG AGCTGAGTCA CCTCAGCGAA GAGCAGCGTG TGGCGGTGTA TTACGGCTAC
GATAATAAAG GCCGCCTTAT CCGCGAACGC CAGACGGTGA GTGACCCGCA GACGAATGAA
CTGTTATGGC AGCATGAGAC ACTACAGGGG TACAGTGAGC AGGGGCTGGC AAACCGGTTT
AAGCCGGATA ACCTGCCGCC GGTGGAGTGG CTGACGTACG GGAGTGGTTA TCTGGCGGGA
ATGAAGCTGG GGGATATGCC GCTGCTGGAA TACACGCGTG ACAGGCTGCA CCGTGAGGTG
TTGCGGCGGT TCGGTTCAGA CACCCTCCCG GAGAGTTATG AACTGACGAC CACATACACA
CCGGGCGGTC AGCTTCATGG TCAGCATCTG ACACTGCCGC AGCTAAACCG GGAGTACGGT
TACGATGAGG GCGGCAGGCT GGTACGCATC AGCGGGCCGC AGCAGACGAG GGAATACCGC
TACAGTGATA CAGGACGCTT AACTAGTGTC CATACCACCA GTACCACTCT GGACATCACC
CTTCCGTATG CCACGGACCC GGCGGGGAAC CGGCTGCCGG ACCCGGAGTT TTACCCCGAC
AGCGCCAGTA CGGTATGGGC GGATAACCGC ATCACGGAAG ATATGCAGTA CCTGTACCGC
TACGACAAAT ACGGCAGGCT GACGGAGAAA ACGGACCGCA TCCCGGAAGG GGGGGTGATA
CGGATGAACG ACGAACGTAC ACACCGGTAC GAATACGATA ACCAGCACCG GCTGGTACAT
TATGTGCGCA CACAGCACGG AGAAACGCAG GCGGAAGGGC GGTATCTCTA TGACCCGCTG
GGCCGCCGTG TGGGTAAACG GGTATGGAAG CGGGAACGGG TTCACTGGAG CGACACGAGG
ATGGAGCTGT CGCGCAGGCC GTATGTGACG TGGTACGGCT GGGAGGGTGA CAGGCTGACG
ACCATCCAGA CCGGACAGAG CCGCGTCCAG ACGTTATATG CGCCGGGGAG TTTCACGCCG
CTGGTGCGCA TCGAAACAGA TGCGGCTGAA CAGGCGAAGG CACAGCACCG CAGCCTGGCG
GAGAAGCTGT CACAGGAGGG AAGTGAGGAC GGCCAGGCGG TACAGCTTCC GGCGGCGCTG
ACGGCGATGC TGGACAGACT GGAGGGCGAA CTGAGGCGTA ACGCGGTGAG TGAGGAGAGC
CGGGCATGGC TGGCGGGATG CGGGCTGACG CCGGAGCAGA TGGCGGAACA ACTGGAGCCG
GAGTACACAC CCCAAAGGAA AATCCATCTT TACCACTGCG ACCAGCGTGG ACTGCCGCTG
GCGCTGGTTA CCCCGGACAA CACGGTGGCG TGGCGCGGGG AGTATGATGA ATGGGGAAAC
CTGTCGGGTG AGGAAAATCC TGAGCACCTG GAGCTGGTGA TACGGCTGCC GGGGCAGCAA
TATGATGAGG AATCGGGGCT GTATTATAAC CGGCACCGTT ATTATAATCC GGGACAGGGG
AGGTATATTA CACAGGATCC GATAGGGCTG AAAGGGGGAT GGAACCTGTA CCAGTATCCG
CTGAACCCTG TCACAGGTAC AGATCCATTG GGATTAAAGG TGACTTTTAA GGGTGACGAA
GAACAGCAAA AAGCTATGAA AGAGGCATAC GAATCTGTAA GGAAGACAAA ACATGGTCAG
GAAATGATAG AAAAAATGGA GTTATCTGAT CATGATTATA TATTTAGAGG ACCGAGGAAA
GGTATGGAAC ATACATGCTA CGATCCCTCC GAATATACTT TCTATATTGA AATAGATTCT
GACCATGCCG CATGCCAATA TCAAGGAAAA GGTAAAGCAT GCAAACTGAC ACCTACGCCA
TTAAGTGTAG TTATCGCCCA CGAAATGGGG CATGCAATGG GTGAAAATGA CGACGGACCA
GGACATATGA ATAATGTCAA AAAACATGAG AACCCTGTCC GCAAAGAAAT GGGAATCCCA
CCAAGGATGA AATACTGA
|
|---|
| Protein sequence | MSGKPAARQG DMTQVGGPIV QGSAGVLIGA PTGVACSVCP TGEASPKYGN PVNPLLGAKV
LPGETDIALP GPLPFVLSRA YSSYRTKTPA PVGLCGPGWK LPSDLWLQLR GDGLILNDNG
GRSVHFEPLA PGEIQYSRSE SFWLARGGAA SQHNSHPLSV MWGMLPEAVR LCPHIYLATN
SPQGPWWVLG WAERVPGADE ALPAPLPPYR VLTGVVDGYG RRLTYHRDGA YGGAVTAVTD
STGRRYRLVL TTQAQRAAQA ASASSSSLSP APSSFPSFSS PPSPRSPSSW SETLPVTACG
EDSGIRLSAV WLVEDPACPD ALPSQPLVRY GYTARGELEA VYDRSGAEVR RFEYDAGQPG
RMTAHRYAGR PASRYRYDDA GRVTEQVNPE GLGYAFAYEK NKITVTDSLG RREVLHTEGE
GGLKRVVMKA SADGSVTRSR YDASGRPEWQ TDATGRKTTY SPDVATGKLT AVTGPDGRKT
KYSYNDRQQL TTTVYPDGLR STREYDERGR LTAETSRTGE TTRYSYDNPQ SELPSGIHDA
TGSSKTMRWN RYGQMVAFTD CSGYETKYEY DRFGQMTAVH REEGQSIYRS YNRRGQLTAV
RDSQGRETRY DYNDAGDLIT VTGPDGNRTE TQYDGWGKAL STTQGGLTRR MEYDAAGRVT
QLTNENGSHS AFTWDTLDRL TQQTGFDGRV QRYGYDLTGK LTQSEDEDLV THWHYDASDR
LTHRTVNGLE AERWQYDEHG WLTELSHLSE EQRVAVYYGY DNKGRLIRER QTVSDPQTNE
LLWQHETLQG YSEQGLANRF KPDNLPPVEW LTYGSGYLAG MKLGDMPLLE YTRDRLHREV
LRRFGSDTLP ESYELTTTYT PGGQLHGQHL TLPQLNREYG YDEGGRLVRI SGPQQTREYR
YSDTGRLTSV HTTSTTLDIT LPYATDPAGN RLPDPEFYPD SASTVWADNR ITEDMQYLYR
YDKYGRLTEK TDRIPEGGVI RMNDERTHRY EYDNQHRLVH YVRTQHGETQ AEGRYLYDPL
GRRVGKRVWK RERVHWSDTR MELSRRPYVT WYGWEGDRLT TIQTGQSRVQ TLYAPGSFTP
LVRIETDAAE QAKAQHRSLA EKLSQEGSED GQAVQLPAAL TAMLDRLEGE LRRNAVSEES
RAWLAGCGLT PEQMAEQLEP EYTPQRKIHL YHCDQRGLPL ALVTPDNTVA WRGEYDEWGN
LSGEENPEHL ELVIRLPGQQ YDEESGLYYN RHRYYNPGQG RYITQDPIGL KGGWNLYQYP
LNPVTGTDPL GLKVTFKGDE EQQKAMKEAY ESVRKTKHGQ EMIEKMELSD HDYIFRGPRK
GMEHTCYDPS EYTFYIEIDS DHAACQYQGK GKACKLTPTP LSVVIAHEMG HAMGENDDGP
GHMNNVKKHE NPVRKEMGIP PRMKY
|
|---|
| |