| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3508 |
|---|
| Symbol | |
|---|
| ID | 4020062 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 4196019 |
|---|
| End bp | 4197401 |
|---|
| Gene Length | 1383 bp |
|---|
| Protein Length | 460 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 637957566 |
|---|
| Product | secretion protein HlyD |
|---|
| Protein accession | YP_564506 |
|---|
| Protein GI | 91794855 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACACA TCATCTCTTT AGTCATAGGC TGTGCCTTGC TTTTACCAGC CAGTCACAGC
GCTCAAGCCG TCATATCGAA CGCCGCTGAG CCCGATGCCG TTAACACCCA GCCCACTGAA
GCTCAGGTTG ATCACAGTCA GCACGATCAT AGCCTCATGG ACGATAGCCA GCCTGCCACT
AACAAGGCTA CAACCACAGC AGATGCAATT TTTAATGCCA AAGCTGAAGA GTTATCCACT
AAGCCTGCAC AAATCAAATA TGTCTGCCCC ATGCACCCAC ATGTGATTTC AGATACCCCC
GGAACTTGCC CTATCTGCGG CATGAACCTG GAAAAAGTCA CAGTTGGCGC TGCCGCTCAG
GAAATCCTGG TGGGCGTTTC AGGGGGAATG CAGCAAGCCC TGGGAATGCG CTCGCAAATG
GTGAAAAAAG GCAGCTTATA CCGCTTTGTT AAAACCATAG GCACTGTGGA ATACAACCAG
GACGCCATCA GCCATATGCA CACACGTATC ACGGGCTGGG TAGAGACAGT AAAAGTGCAT
AACGTGGGCC AGAAAGTGAA AAAGGGCCAA CTCATGTATG AGTTGTATTC CCCAGAGCTT
ATCAATGCTC AAGACGACTA TATGCAGGCG CTGGATTATT TTAAGCAAGA CAAAAAGCGC
GGCAGCATCT TAAAAGAAAA GGCGCGTCAA CGCTTGACCT TATTAGGGGT CGCCGAACAC
TTGATTTCCA AGCTAGAAAC CAGCGGCAAC ACCATTTATA AGATGCCCTT TTATGCACCT
CAGGATGGTA TTGTCAGCCA ACTCGACTTA CGTGAAGGCA TGTATATACA ACCGGGTAAT
ACCTTGGTTG AATTAGTCGA TATCTCCAGC GTGTGGGTCA TTGCCGACGT ATTCGAGAAC
GAACAAAGCT GGCTCGGTGT GGGTCGAAGC GCCGAGGTCA CAGCGGCGGC CCAAGGCCTG
TTTGATTTGC CCACTAGCAT AGATTACATC TACCCCGAGC TTGATACCGT GACTCGTGCG
ATGCGCGTCA GATTGAAACT GAACAACCCA AAACAATTGC TTCGCCCTGG CACCTTAGTG
GATGTGTCTC TGTTTGGCGG TCCTAAGCAT GACATCATCA CCATCCCAGC CGAAGCCTTG
ATCTTAACCG GCCGTGAAAA TCGCGTCGTC GTGCAGCGCG AGTCTACAGG TTTTGCTTCA
ATTTCAGTGA AAGTTGGCAT GATGGCACAG GGGCAAGCAG AAATTATCGA AGGCCTGAAG
GAAGGAGACC ACGTAGTGGT TTCTGGGCAA TTCTTGCTGG ATTCAGAAGC CAGTATTCAG
GGCAGTTTGC AGCGCTTAAG CGGCAATGCA CAGCCTGATC CCCATGCCGG TCACGGCCGC
TAA
|
|---|
| Protein sequence | MKHIISLVIG CALLLPASHS AQAVISNAAE PDAVNTQPTE AQVDHSQHDH SLMDDSQPAT
NKATTTADAI FNAKAEELST KPAQIKYVCP MHPHVISDTP GTCPICGMNL EKVTVGAAAQ
EILVGVSGGM QQALGMRSQM VKKGSLYRFV KTIGTVEYNQ DAISHMHTRI TGWVETVKVH
NVGQKVKKGQ LMYELYSPEL INAQDDYMQA LDYFKQDKKR GSILKEKARQ RLTLLGVAEH
LISKLETSGN TIYKMPFYAP QDGIVSQLDL REGMYIQPGN TLVELVDISS VWVIADVFEN
EQSWLGVGRS AEVTAAAQGL FDLPTSIDYI YPELDTVTRA MRVRLKLNNP KQLLRPGTLV
DVSLFGGPKH DIITIPAEAL ILTGRENRVV VQRESTGFAS ISVKVGMMAQ GQAEIIEGLK
EGDHVVVSGQ FLLDSEASIQ GSLQRLSGNA QPDPHAGHGR
|
|---|
| |