| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2330 |
|---|
| Symbol | |
|---|
| ID | 4018823 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 2757293 |
|---|
| End bp | 2759749 |
|---|
| Gene Length | 2457 bp |
|---|
| Protein Length | 818 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 637956352 |
|---|
| Product | Ig-like, group 1 |
|---|
| Protein accession | YP_563333 |
|---|
| Protein GI | 91793682 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTCAG CTTATAACGT TTATTTAGCG CTTTTATTTT CATTGTTAAT GTCAGCCTGC
GGTGGTGGGG GTAGCATTAC TGACTCCGGG GATGGCGGCA ACGTTACTCC TCCAGTCACC
AGCGTCGTAT TATCTTCAAA TATCGCCGAT GTGACGGCGA CAACTCCAGC CACAATTACC
GCAACCGTAT CTCACTCGGT AAACGGGCCC ATTAGTGGTG AATTTATCAC CTTCAGTTTA
AAAGACCCAC TATCAGGTAC TTTCGATCCA GTATCGGGCA CGGCGCGAAC TAATGCGCAG
GGCATTGCAA CGATTAAGTT GTCTACGGCC GATAAAGCGG GTGCCAGCTT AGTCACGGCT
GCACTGGAAT CGGGCGAGTT CGGTACAGTC GCAGTGAGCA TGAAAGGCGA TGGTGGGCAA
GCCGCAGGTG GTGCCCAAGT TGATTTAGTC TTAACGGATG CCGCAGGTCA AGCGATACAG
TCTATCACCA CATTAACGCC TGGTAAGCTC ACGGCGACAG TAAGCGGCCT AACTAAGCCT
GCTATTGTGA CTTTTGCTAG CCCAATCGGT GATTTACCTA TTAAAACAGC AGTGACCAAT
GCTCAGGGTA AAGCCAGTGT CGATATTTAT GCCGGCAGTT CTTTAGGTGC GGGAGAAGTT
ACGGCATCTC TGTCAACCGG TGAAATCGGT AAAGCGATTG TAGTGGTAGG CGCCACCAAT
GTGGTAATGG GAAGCGGCAG CCCCTTTGTA TCGGGTAAAG CGGCGGTGAG TGTCGTGGAT
TTAACTGCTG GCGGCACGGC GACTATTTCT GTGCTTATTC AAGATGATAA AGGTAATCCT
TACACTCAGC CAGTGGATGT CAATTTTTCA TCTACCTGTG CCACAAAAAG TCCAGCTCAG
GCGACCATCA GCTCGCCAGT CTCTTCGGTT AATGGTGTGG CGACCACCAC CTATTTAGCC
CAGGGCTGTG TTGGTGCAGA TCAAATTAAC GTGACCGCTA ATGCGGGTGG CATCAACCTT
TCGGCCAGTG GCAGCTTAAA CGTGTTACAG GCAAGTGTTG GCAGTATCGT GTTTATTTCA
GCGCAGCCGC AAAACATCAG TATCTTAGGC ACAGGGGGCA CTGAGTCTTC TGTGGTTAAA
TTCAAAGTGC TGGATAAGAA CAGCAATGTG GTCAGTAACC AAAGCGTCAG TTTTTCTCTT
AATACCACAG TGGGCGGCAT CAGTTTAGAT CCTGTTGTCG CCACGACCAA TAGCGAAGGC
ATAGTGCAAA CCGTGGTGCG CACGGGTACG GTAGCAACGT CAGTGCGAGT CACTGGTACT
GTGGATGGCT CGTCACCTTT GATTTCAAGC CAATCAAGCC AGTTAATTGT TTCGACCGGT
ATTCCAGATC AAGACAGTTT CTCGCTTTCG GCTGAGTTTT TAAATGCCGA AGGCTGGGAA
CAGGAAAATA CTGTGGTTAA AGTCACGGCT CGCCTCGCCG ATGCCTTTAA TAACCCGGTA
CCGAATGGCA CTACAGTGTC TTTCACCACT GAAGGCGGGG CGATTCAAGA TGCCTGCCAA
ACAGTGAATG GCGCCTGTAG CGTCAATTGG ACCAGTCAGC AACCCAGACC CGAAGGTGAA
GTGATCATAG ATGGCACGGG TGCCATGATA CGTAACCCAA GTGCGGTACT AAGCTATGAT
GCTTCTGTGG GGCGCTATGG CAATATTTAT GGCCAACGTT ATGGTGGCCG CGCAACGATT
ACGGCTACCG CCATTGGTGA AGAGTCCTTC CCTGATCTTA ATGGTAACGG CCGCTTCGAT
GCTTCTGAAT TAAATGCCTT TTTGACTGAA AAAGATGTCA GTGGTAGACC CTTCGACCTA
GCCGATGCCT TTACTGATTA CAATGAAGAT GGCTTGTTTA ATCCTCAGCA AACCGGCGGA
CAAATAGGCG GTAATTTAGA GGAGTTGGTG GATTTTAATA CTAATGGGGT ATTTGATGCC
GCAGACAGTA AATATAACGG GGTACTCTGT GCTCAAACAG CACATGCAGG TTGTGCCGAT
GGAGTGAGTG ATTCACAGTC ATTGTATGTT AGAGCGAGTC TAGTGATGGT GATGTCGGGT
AGCACGGCCT ACGCAACGAA GGGCAGTGAT ATTCTCATCT ACGACCATAC AGGTATCCAT
TCTGGCGGCA ACATTACCAT ATTAGGTAAA GGTGCTGCTT CGGTATTGTT TACAATTTCG
GATTTACATA ATCAACAGAT GCCTGCAGGC TCTAAAGTCA GGTTTAAAAC CAGTGCCGGT
TCTGTAGTCA GTTCACCTGA GCTAATTTGG CCAAGTTCAA ATTATAATGG TGGTCGTGAA
TTCAGTGCGA CCCTTAAAGG GGAGGATGAG CCAAATTCTG GGGTCTTTAT TGTCGAAGTC
GAGGCTCCAA ATGGCTTAGT GACTCAGGTC GTATCCATTG CTGTAAGTAT TATCTAA
|
|---|
| Protein sequence | MKSAYNVYLA LLFSLLMSAC GGGGSITDSG DGGNVTPPVT SVVLSSNIAD VTATTPATIT
ATVSHSVNGP ISGEFITFSL KDPLSGTFDP VSGTARTNAQ GIATIKLSTA DKAGASLVTA
ALESGEFGTV AVSMKGDGGQ AAGGAQVDLV LTDAAGQAIQ SITTLTPGKL TATVSGLTKP
AIVTFASPIG DLPIKTAVTN AQGKASVDIY AGSSLGAGEV TASLSTGEIG KAIVVVGATN
VVMGSGSPFV SGKAAVSVVD LTAGGTATIS VLIQDDKGNP YTQPVDVNFS STCATKSPAQ
ATISSPVSSV NGVATTTYLA QGCVGADQIN VTANAGGINL SASGSLNVLQ ASVGSIVFIS
AQPQNISILG TGGTESSVVK FKVLDKNSNV VSNQSVSFSL NTTVGGISLD PVVATTNSEG
IVQTVVRTGT VATSVRVTGT VDGSSPLISS QSSQLIVSTG IPDQDSFSLS AEFLNAEGWE
QENTVVKVTA RLADAFNNPV PNGTTVSFTT EGGAIQDACQ TVNGACSVNW TSQQPRPEGE
VIIDGTGAMI RNPSAVLSYD ASVGRYGNIY GQRYGGRATI TATAIGEESF PDLNGNGRFD
ASELNAFLTE KDVSGRPFDL ADAFTDYNED GLFNPQQTGG QIGGNLEELV DFNTNGVFDA
ADSKYNGVLC AQTAHAGCAD GVSDSQSLYV RASLVMVMSG STAYATKGSD ILIYDHTGIH
SGGNITILGK GAASVLFTIS DLHNQQMPAG SKVRFKTSAG SVVSSPELIW PSSNYNGGRE
FSATLKGEDE PNSGVFIVEV EAPNGLVTQV VSIAVSII
|
|---|
| |