| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1927 |
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| Symbol | |
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| ID | 4018416 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 2284233 |
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| End bp | 2285378 |
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| Gene Length | 1146 bp |
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| Protein Length | 381 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 637955949 |
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| Product | tetratricopeptide TPR_2 |
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| Protein accession | YP_562933 |
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| Protein GI | 91793282 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATATTT CAAGGAAGAT TGAGCGACTT GAGCTTTTTC TAGAGCAGGA TAAAGATAAT
TTGAATTTAA TGTTAGATTT AATTTATCTT TCATTAGATG CAGGTTCTAT TGATATAGCA
GAAAATTACC TATACAGGGC CCAACAACAG CACCCAGAAT CCTCTCAATT AATTTACTTA
TCGGGTTTAA TTAGCTGTCA ACGGAAAAAC TTTGAACAAG GATTAATTAC ATTCAATTCT
TTGCTAAGTG CGGGTGTTCG TTCTGCTAGT ATTTTATATC AAGCTGCATA TTGTAATATT
CAATTAGGTA ACCCAGAGAC GGCATTAGAG CGACTTATTC ACGCAAGTGA GCTATCACCA
GAAACAGAAA TATTGTACCT ATTAGCCCGT ACTCAATATC AACTTAAAAA TTTTGAACTT
GCAGTTTCTA CATTAACTGC TCTCGCTGAT AGCGATGCTA AGTATGCCCC CGCCCATAGT
TTACTTTCTC AGATATATAT GGATATAGAG CAGTGGGCAG ATGCACAAGC GTCAGCGGCT
AAAGCGTTAG CGTTAGATCC TAACAATGTG ACTGCCAATA TAACGATTGG GTTCATAACG
TTAAATTCAA ATCAATATGA TCAGGCTGCT CGTCACTTTT CTCAAGCCTT GAATGTCAAT
GATGAGAGTT GCCGCACCCA TTTGGGGCTA GCCATTATTG ATGTTTTCCA ACAAAGGTAT
GTGGAAGCCG AGCAGCATTT GCTTAAAGCT TTGAGTCTGC AAAATGATTT ATTACCAGGG
ATTAACTTAC TCGGCTGGCT CTATTTATTA ACAGACAGGT TTGCCTTGGC AAGAGACGTT
TTTGATAGGG GTGTAGAAGT CGACCGTAGT TATGCTGAAA TGTATGGTGG TATTGCTATT
GTCGATATAT TAGAAAAAGA TGAAACAGCG GCGCGAAAAA ATGTCGCCAT TGCACTGCGT
TTAGACAAAA TGAGCTATGC AGGCAATTTT GCAAAAATTT TACTTTTACA AAATGCTCAG
CGCTTATCTC AAGCCGAAAA AGTGTGGAAA AATTTGATCT CATCACCAAT AGATGACACG
GGTAAGACCT TAGAGCAAGC CGTGATTGAA CAAATCAGGG CATATTTAAA AGTCACCCTT
CATTAA
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| Protein sequence | MDISRKIERL ELFLEQDKDN LNLMLDLIYL SLDAGSIDIA ENYLYRAQQQ HPESSQLIYL
SGLISCQRKN FEQGLITFNS LLSAGVRSAS ILYQAAYCNI QLGNPETALE RLIHASELSP
ETEILYLLAR TQYQLKNFEL AVSTLTALAD SDAKYAPAHS LLSQIYMDIE QWADAQASAA
KALALDPNNV TANITIGFIT LNSNQYDQAA RHFSQALNVN DESCRTHLGL AIIDVFQQRY
VEAEQHLLKA LSLQNDLLPG INLLGWLYLL TDRFALARDV FDRGVEVDRS YAEMYGGIAI
VDILEKDETA ARKNVAIALR LDKMSYAGNF AKILLLQNAQ RLSQAEKVWK NLISSPIDDT
GKTLEQAVIE QIRAYLKVTL H
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