| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1486 |
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| Symbol | truA |
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| ID | 4017255 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 1723719 |
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| End bp | 1724504 |
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| Gene Length | 786 bp |
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| Protein Length | 261 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637955496 |
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| Product | tRNA pseudouridine synthase A |
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| Protein accession | YP_562494 |
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| Protein GI | 91792843 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0101] Pseudouridylate synthase |
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| TIGRFAM ID | [TIGR00071] pseudouridylate synthase I |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0039876 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCGGGTTG CGTTAGGTAT CGAATATGAT GGCAGTAGTT ATTGTGGTTG GCAGCGCCAA
GTAGAAGTGG ATTCGGTACA AGCTCAGCTT GAAAAAGCCC TTTCTTTAAT AGCCAATGAG
CCTATCGAGG TTGTGTGTGC AGGGCGCACC GACGCAGGTG TACATGGCAC GGGTCAAGTG
GTGCATTTTG ATACCACAGT TATCAGACCA GACTCAGCAT GGACACTAGG GGTTAATGCT
AATTTACCTG ACACCATTGC GGTTCGCTGG GTTAAGCTTG TCGATGACAG CTTTCATGCG
CGCTTTTCGG CAACCGCGAG ACGCTACCGT TATGTGATTT ATAACCATAA GTTTCGCCCA
GGATTGTTGC GCCATGGCCT GAGTCATTAC CATGGAGATA TCGATGAAAC CTTAATGCAT
CAAGCGGCGC AGCAGCTGCT AGGTGAGCAT GATTTTACCA GTTTTAGGGC GATGCAGTGC
CAGTCTAAAA GCCCATTTCG CAGCGTTCAT GAAGTGAATG TAACCCGCCA AGGCATGTAT
ATTATGGTGG ACATTAAGGC TAATGCCTTT TTGCATCATA TGGTGCGCAA TATTGTGGGT
AGTTTGCTAG AAATTGGCCT TGGTAATCAG CCGCTTAATT GGATCTCTAA GTTAATTGCA
GTTAAAGACA GAAGGCAAGC GGCAGCAACG GCTAAACCCA ATGGTTTGTA TTTGGTTGAT
GTTACTTATC CAGAAGAGTT CGCTATTCCT AAACTCGCCC TAGGGCCTTT GTTTATGTTG
GATTAG
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| Protein sequence | MRVALGIEYD GSSYCGWQRQ VEVDSVQAQL EKALSLIANE PIEVVCAGRT DAGVHGTGQV
VHFDTTVIRP DSAWTLGVNA NLPDTIAVRW VKLVDDSFHA RFSATARRYR YVIYNHKFRP
GLLRHGLSHY HGDIDETLMH QAAQQLLGEH DFTSFRAMQC QSKSPFRSVH EVNVTRQGMY
IMVDIKANAF LHHMVRNIVG SLLEIGLGNQ PLNWISKLIA VKDRRQAAAT AKPNGLYLVD
VTYPEEFAIP KLALGPLFML D
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