| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0715 |
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| Symbol | |
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| ID | 4016630 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 826239 |
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| End bp | 827957 |
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| Gene Length | 1719 bp |
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| Protein Length | 572 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637954700 |
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| Product | choline dehydrogenase |
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| Protein accession | YP_561728 |
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| Protein GI | 91792077 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | [TIGR01810] choline dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00120252 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGCAA CAATGACAAC AGCAATTACC ACAACAAAGA AAAAATACGA CTACATCATA
GTTGGCGCAG GTTCAGCGGG TTGTGTGTTA GCCAATCGTT TGAGTGAAGA TCCTAATAAC
AGTGTGTTAT TGCTGGAAAC CGGTGGCAGC GATAAAAGTA TTTTTATCCA GATGCCAACG
GCTTTGTCTA TCCCAATGAA TACCCCTAAG TACACTTGGC AATTTGAGAC AGACCCAGAG
CCCTATTTGG ATAATCGCCG TATGCATTGC CCACGTGGCA AGGTGTTAGG TGGCTCATCA
TCAATAAATG GCATGGTGTA TGTCCGTGGT CATGCTCATG ATTTTAATGA GTGGCAGCAG
CACGGCGCCG AAGGTTGGGA TTACGCTCAT TGCTTACCTT ATTTCAAGAA AGCAGAAAGC
TGGGCATTTG GCGGCGATGA TTATCGCGGT GATGTGGGGC CTCTTGCCGT TAATAACGGC
AATCAAATGA AGAACCCACT TTATCAAGCC TTCGTTGATG CGGGTGTTGA CGCGGGATAT
TTGGCGACAG CCGATTATAA CGGTGCGCAG CAAGAGGGCT TTGGCCCTAT GCACATGACG
GTTAAAAACG GCGTGCGTTG GTCAACCGCG AATGCCTATT TACGTCCAGC GATGAAACGC
AAAAATTTAA CTGTAGTGAC TCACGCATTA ACTCATAAAG TCTTGTTTGA AGGTAAAGCC
GCCGCTGGCG TGCGTTACGA GCGAAAAGGC GAGATGGTGG ATGTGTTTAC CACTAAAGAA
GTCATCTTAA GTGCAGGCTC TATTGGGTCG CCGCATCTAT TGCAACTCTC TGGTGTGGGC
GAGGCTAAGA CGCTAGCCGC AGCGGGTGTT GATTTAGTAC ATGAGCTGCC TGGTGTAGGT
GAGAACTTAC AAGATCATTT AGAGTTTTAT TTCCAATTTA AGTGCACTCA GCCTATTTCC
TTAAACGGTC AATTAGGTCC ATTAAGTAAA CTGAAGATTG GGGTGCAGTG GATTTTAGAT
AAATCCGGCC TTGGGACGAC GAACCATTTT GAATCTTGTG GTTTTATTCG CTCAAAGCCT
GATTTAGCGT GGCCAGACTT GCAGTATCAT TTCTTACCTG CAGCCATGCG CTATGACGGT
AAAGAAGCGT TTGCCGGTCA TGGGTTTCAG GTGCACATAG GTCATAACAA GCCTAAGAGT
CGCGGCAGTG TAAAAATTAG CTCAAGCGAT CCTAAAGTGC ACCCAAAGAT TTTGTTTAAT
TATCTTGAAC ATCAAGATGA TATCCAAGGA TTTAGGGATT GTGTGCGCTT GACTCGCGAA
ATCATCAATC AGCCTGGTTT GGATGCTTAC CGTGGTGAAG AAATTCAGCC TGGTATGGCA
GTGCAAACTG ATGAGCAAAT AGATACCTTT GTGCGTCAAT CAGTTGAAAG TGCTTATCAC
CCTTCATGTT CTTGCAAGAT GGGAGTCGAT GAGATGGCTG TGGTTGATCC GCAAACACGG
GTGCACGGTG TCAGTGGTTT ACGTGTGGTG GATTCGTCCA TTTTCCCGAC CATTCCAAAT
GGCAACTTGA ATGCGCCGAC CATCATGTTG GCAGAGCGAG CGGCAGACTT GATATTAGGT
AAAACGCCTT TGCCGGCATC AGATGCAGAA GTGCGTCTTG GTGCCGATTG GCAAACTAAG
CAACGTCAGA ATACCCCAAA GCGTGTGTTC AATAATTAA
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| Protein sequence | MTATMTTAIT TTKKKYDYII VGAGSAGCVL ANRLSEDPNN SVLLLETGGS DKSIFIQMPT
ALSIPMNTPK YTWQFETDPE PYLDNRRMHC PRGKVLGGSS SINGMVYVRG HAHDFNEWQQ
HGAEGWDYAH CLPYFKKAES WAFGGDDYRG DVGPLAVNNG NQMKNPLYQA FVDAGVDAGY
LATADYNGAQ QEGFGPMHMT VKNGVRWSTA NAYLRPAMKR KNLTVVTHAL THKVLFEGKA
AAGVRYERKG EMVDVFTTKE VILSAGSIGS PHLLQLSGVG EAKTLAAAGV DLVHELPGVG
ENLQDHLEFY FQFKCTQPIS LNGQLGPLSK LKIGVQWILD KSGLGTTNHF ESCGFIRSKP
DLAWPDLQYH FLPAAMRYDG KEAFAGHGFQ VHIGHNKPKS RGSVKISSSD PKVHPKILFN
YLEHQDDIQG FRDCVRLTRE IINQPGLDAY RGEEIQPGMA VQTDEQIDTF VRQSVESAYH
PSCSCKMGVD EMAVVDPQTR VHGVSGLRVV DSSIFPTIPN GNLNAPTIML AERAADLILG
KTPLPASDAE VRLGADWQTK QRQNTPKRVF NN
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