| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0137 |
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| Symbol | |
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| ID | 4020384 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 153873 |
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| End bp | 161366 |
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| Gene Length | 7494 bp |
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| Protein Length | 2497 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 637954110 |
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| Product | Integrins alpha chain |
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| Protein accession | YP_561157 |
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| Protein GI | 91791506 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTCAAAA AACTAGCCTT CATTTCTGTG TGTTTTTTAC TTGAGGCGAT ATCCTTTAAG
GCGAATGCGA TTAGCGATGG TGGCATTTCA AAAGTATATA TGGGGGAAGG TAAGTTCTCT
TTGAGCATTT ATTCCGATCC CTTCACAAAC CAACCTATGG CAGTTGCCCC CTGCGATGTT
GAAACCCAGA GCAATAAGCT TGTAAGCACA TCGATTTCGA TTAACCGTGC AGTGCCTTTA
CCTATTGATG GTAACTACCC GATAGATAAT TGTGGAACCA CAAAATGGTA CCGTACAAAA
GTCGCGACTC TTACGCCTAT ACCGGGCGAG TTGTTGGCAG GAAGCAATAA CAGCATTACC
CAAGGATTAT TAGATTTAGG TGAATATCAA TACCGTTATC AAAGCTGCAC TGCATCTGGG
TATTGCCAAG GATATTCAAC CCCGCTAACT ATTACAGTTC AACCGATAAC CAAACCAGAG
CAACTGTTGT TGCAAACCCC TTCCAATTCC AGTGTTGAAT TAACATGGAG TTTGCCGAAT
AGAATTTCAT TGAGAGATCA AGATAGCGTC GTTGAGCAAA GTGTTAATGG TGCAGCTTGG
ACTAAAGTTT ATGTGGGCAA ACAAACTTCA ATAATCTTAC CAACATCTGT TGGGCAATAT
CAGTTTAGAA TTAAAACATG CAGCTTTGCT AGCTGTAGTG ATTATGCGTT ATCGAACAGT
ATTAACAGAA GTGGCGGCAC GATTGAACAA TTAAATTATA GCATTCATAA AGATGCTAAC
GGCAATATCT ATCTTGTCCG CCCTGCTACA TTTATTCCGA TATCGGGTGA TATTTTCATT
CCTCTTTTTA TTGCCGATAA AGGCAATGTG ATTGTAATGA CTAAGAATGG TGCATCTTGG
TCATTAACAG AAATTACCTA TGAGGAGTTT ATCGCTTTAC AAACTAATAT CGTTCGTGAA
GCTTCAGTGC GATACGAAAA TTTAACCGGT AATACCAGCC TTGACCTCAT CATTTCGCTA
AGTGGCAATT TCGCAGATAG CATTGTAGTC AATGATATCA ATGCAACAAC TCATGAGGCT
ACGTATTGGG ATTGTAGCGA AAGTGTTTGT GTTGTAGCAG GTTCTCCTGA GGCTGTGCCT
GCAGTACAAG TAGCGCCTAT ACCAAGTATC AATGTTGCTT CATCAAGTGT AGGTATCACA
TCGGGGGACT TTAGAGTCGA CGAGTCAGGT GCGGCTACAT TTAATATGCC GCTGAGTTTC
CCTGTCGGAA TTGCCAGTGT TACACCGCAA ATGAGCTTAT CTTATAATTC CAATTCAGGT
AATGGTGAAT TAGGCATTGG CAGCAGCATT GTTGGGCTGA GTTCCATTAC TCGTTGCCGC
TCAACCTTTG AGCAAGATGG TGTTTCAGGA ACATTAACAC TGACCAAAGC TGATAGATTT
TGCATCAATG GACGAAAGTT GGTGTTAAAG AAAAATACTG GCGAGTATGG TGCAGCGGGC
TCGGAATACG CGACTGAAGT CGACAGCTTT ATTTCTGTCG TTGCAGTAGG CAGTAGTGGT
AACGGTCCGG ATCATTTTGA AGTGACACAT AAAGATGGCC GTTTTGAAAC ATATGGTCAA
GCTGGTAATA GTCAACTATT CGGATTTGAT GGGGATACCA TAGAGACTTG GTATCTATCA
AGCCAGCAAG ATAACCTAAA ATTAGATGAC AACAAGATCA GCTATTGTTA TATCAATGGT
GGCCTTAATT GTCGTTCAAC TTCAATGTTG GCTGGTAATA ATGAGATTTT GATCGATACC
ATTAGTTATA GCGGCAACAC AGTTGAATTT AATTATCAAC ATCGTACCGA CGTAAGTCAG
GGGTATTCGC TAGGGACATT AAAAGAGCAA ACACTGCGAT TGGAAGATGT TCTTGTTAAA
AATCATAATA ATGTGCCCTT AACAAAATAT CTGACGTCTT ATGATTATAA TGTTGCAAGT
GGGTTCAGTC AGTTGCTTTC TTTGGTACAA TGTAATGGTT CTGGAAATAG TTGCCTGCAG
CCCATAAGGT TTAATTGGAA ACCTGCAAAC CCATACTTAA TGTCTACCGG TAGGTGTTTT
AGCACTGATC CCAATCCCTA TGTTTCCGAT ACCGGCACCT GTAAATTACC TAAGACGGAT
GGTACATTTT ACGGGGCAAA ACCCATTGAT TTCAACGCCG ATGGTTTTGT TGATTTAAGT
TATTTGGTCG CTGAAGGGAG TTATTATTAT TTAAACTTCT TGCTTAATAA TAACGGTGTA
TTAACTGGGG AAAATGCTCC GCATTCGAAT TCCAGTGAAC GCTTATATTT CTCAAATGAT
AATACCCCCG AATGGCACAT CATAGATGCT AACGGTGATG GCTATCAGGA TGTTTTGCTA
AAGCGTAAAA GAACGACAAA ATATACAAGC CAAGCTAATC CAGAACAATG GTTCTTATAT
CAAAATTCCG GCAAAACGGA TCATAGAGAA CGATTATTTA CTCCTGTAGA GTTTGATTTA
CCCACCTTTG AAAATAAAGC CCTAGTTGTT GCTGTCTATG ATTACGATGG TGATGGACTC
GCTGATGTTA TCGCTGGTCG TAAAGACGGT ACTACCTATG GCTATAGAAA AAACAACGGT
AATGGTTTTG ATGCTTTTGT TACCTTGCAT GTTAATGGCA GTTCACGTAA TCAGGTGGAG
TTTGATAAGT CGATATATGG AGATTTTAAT GGTGATGGCA AAGTCGATCG CATATATAAA
TCAAGACCAA ATTATACTCA GTGCGATCCG GGCAGAACCT GTACCGTAGA TTGGCGATTA
AATGGGAGCT TTATATCCAC CAACATGATC AATGTTGTCG TCGGTGATAT CAATGGTGAT
GGTTTATCTG ATCTTGTGTA TGAATATGGT GTCCATAATA AAATTAGAAC TCGATATGCA
ACAGGCAAAG GATTTACTGA TGGTGAGACA CTGTCCTTAG AGGAAGGTTT CAAGCATGTA
CAACTAGTCG ATATTAATGC GGATAGTCGA GCCGATCTTG TTTATTACAT TCCCAGCACA
AGACGCTTTA AATACCATTT ATCAACAGCC AATGGATTCA GTGACAGTGA GTTGCTCGAT
GCCTCAGTAA GCGCCGGGAC CAATGTCGAT CAAGTGTTTG TTGTTGATAT TAATGGCGAT
GGGCTCAACG ATATCTCTTA TGTGGATATC AGTGCTAAAT CATTGAAGAT TATTAGAGGT
CAATCACAAC CGGATAATGA AGTTAACAAA GTATCAAGCA TAGTAGATGG TTATGGTCAA
TCTACGGCAA TAAAATACCG TACTATGTTG GATAAGACTG TCTACCAGGT TTCACAAGCG
CAAGACTCGC CCTTTTACAC GCCGGAAAAT TTGAATTTAC TTAATTGGGG TCGTGGCAGT
CGTATCTTCA ATCTTTTGTC ACCAATGTCT CTGGTGGCTT CTACAGAAAA TCGTCAGCAA
AGAGTTAATT ATAAATACTA TAAAGCCTTG CTACAGGGTG GCGGTAGAGG TTTTCTTGGC
TTTGGACACA TAGAGTCAAG GTATTATAAA TCAGGCTCGG AATTTAAAAC GACAACATCA
TATAGACAAG ATTTCCCCTT TACCGGAATG GCTGAAGTGA CTTTTCGTTA CTATGGTGAT
ATCAGTTTAG GCTCTGTGAT AAATAAGCTA AAGCTAGAAA GAACCATTGC GCCTTTTCAA
CCTGTCATAG AAAAAGTGAC AGAAAATAAT AGCAGCATCA GCAGCGCTTC TTTGCTTCAA
TCACTCAGTA AGAAAATTAC TCAGCGTCAA TACGATTTGT TTGGCAATAT CACCCAAGAA
CAGGTCACGA CGACAGATTA TGCTAATAGT AATCAAGTGA CGACTCAGGT TGTAGATAAC
GAGTATGGCA GTACAGATGA GTATAAACGA TTTGGTCGTT TAACTAAGAC CACGGTGACT
CACGGGGTGA CTGGTCAAAA TACTATCATG CGCGAGAGTG AATTTACTTA CCTGAGCAAT
CTATTATTAG AAAATGAAAT TATAGAACCA AATGGCGGGA ATGAGCTTTA TCTTCAAACA
CATTATAACT ATGACTCGCT AGGGAATGTG ATTAAAACCT CTGTCTGTTC TAAGCATTTT
GAAACCACAT GTGGTGCAGG GCAACAGAAT ACTAATGACC CATTATCAAT ACACCGTAGT
ACAGTGAACA ATTATGATGC CCAAGGGCGC TACCTTATCA GTAGTGGCAA TGATCTCTTT
ATTGAGGCAA GGTTCAAAAA TTTCAATGCA TTTGGCCAAC CTCAAACAAT CTTAGATGCT
AATAATAAAG CCGCCGATGT ACGCTATGAC GACTTTGGCA ATGAGTATTT CAAACGGGAT
GGTACCGGTT CAAGTCAACA CACAACTAAG GCATGGTCTA GCGATTCAGC TTCGATTGCG
GCCCCATCAA TCGCGGAAGA TTATTTTTAT GTCATTGGCA TTAGTGCTCA AGGTGCACCG
AGTAAGTGGC AGTACATCAA CGATAATGGG CAAATGATTG CCGAAGTTAG CCAAGGTTTC
TCTGAGGATA TTTATCAAGG CCATAAATAC GATGCATACG GGCGTAAGAC TCATGAATCT
ATACCCAGCA CGTTGAGTGT TGCTCTGTAT GGTCCAGTAT GGGTTCGTAC TGGCTATGAT
GTATTCGATA GGGTTATCTC TACTACCACG CCAGAGCGAG TCACTCAATT TACCTACGAC
AACCGCGTGA CAAGTTCTAC TGTCAGCAAC GCTGCAGGGG CGATTCATAC CTTTAGTCAA
AGCTCTAGCA AACAAATTGA TGCACAAGGC CGGCTGCTCT ATGTCATAGA TAACGATAAT
CAACGCCTGG ATTACACGTA TGATGCTATG GGTAATTTAT TAACTGTGAC AGGTGTCGAC
CAGCAAGTGA CGACCAATCA GTATGATGCC AAAGGCTACC AAAAAGAGTG GATGAATGAT
CCTGATTCGG GGGAGTGGCA TTATAGTTAT AACGCCCTGG GTGAATTGGT AAGCCAGACC
GATGCCAAGC AGCAGAGTAT AAGTTACACC TATGACGCCT TGGGCAGAAC CCTGTCTCGT
ACCGACGCAG AGGGGACGGC TCAGTGGCGT TTTATCGACA CCCGACCACA TCTATTGAAG
CAAGAAACTA CCACTGGCTA TGTTAAACAA TATCAATATG ATGATTTTGG ACGGCAAATA
CAGACCCAAC TGGTATTAAA CGCAGAGCAG CAATTTTTCG TTGAATCGCA GACTTACGAT
CAGTTTGGCC GAGTGTTCCA AAAATTTGAT GCCAGCGGTG ACTTCCAAGG TATACGTTAT
CATTACAACG ACCGCGGGTA CGTATTTAAG CATCAAGAGG CTCGAGAGGG CATGAATGGT
GAAGTGTATT ACACCATCAA TGCCATAAAT GCCCTGGGAC AAATCACCGA TGAAAGCCTA
GGTAATGGCG CCCATGTTGT TAAAAATTAC AGCAACCTAA CCGGTAAGCT AAATGGCTTG
GCTGGAAGTC ATCAAAATCA AACCTATAGT TTCGATGGCC TAGGCAACTT AAAGCAGCGA
ATTAATTATA ATCGCACTGT TAATGGTCAG GCCCTAACCG AAGAGTTTGA TTACGACAGC
CTTAATCGCT TAGAAACCGT GCAGTTAAAT GGCATTGAGA CGTTAGGATT AACCTATGAG
GGTAATGGCA ATATTCTGTC TAAATCCAAT GTTGAAGCTG GTGCACGCTA TCAATATGCA
ACACAAGCGG CACAATGTAA TGCCACAACG GATGTTGTAG CAGGCCCCCA TGCATTAACG
CAAGTGGGGC AATTAAGCTA CTGCTATGAT GCCAACGGTA ATCAAACTCG CACCTTTAGC
GGCACAAACC AAACCAGAGC AGTAAGCTAT ACCAGCTTCG ATAAAGTGTC TGCTATCACT
GCCAATAATG AGACCACCCG CTTTACTTAT GGTGCCGATC GCAATCGTTA TAAACGCGAG
AATATCAAAG AGGGTAAAAC ACGCACGAGT TTCTATTTTG GTAACATTGA ACTTAATCAA
AATGAACTCG GTACCGGCTA TGATCTAAAG CGCTATATTG CAGGCTATGG TTTGCAAACC
CACTATGCGT CGACAGGGGT AAAGCAATTA CAGTATTTGC TTAAAGACCA TTTAGGCTCT
ATCGATGTGG TGTTAAATGA CAGCAATGCC ATTGTGGGAG CCATGAGCTT TGGGGCATTT
GGTGAGCGCC GAGCCGCAGA GAATTGGTCA CCTTGGTCAG CGGCGCAATT TTCGAATAAG
ATCAGCGAGC TTAGAGCGAT AAGCATTCGT GGCTTTACCG GGCACGAGCA TGTGGACCAT
GCCAACATTA TCCACATGAA TGGCCGAATA TATGACAGTT ATACTGGCCG TTTTATGCAA
GCCGATCCTA TGGTGCAAGC ACCTGAAAAT GGCCAAAATT TAAATCGCTA TAGCTATGTG
CTTAATAACC CTTTGAGTTA CACAGATCCC AGTGGCTACT TCTTCAGTAA GCTGTGGGAT
AACATTAAGC CTTTCGTTGG TGTGATAGTC GGCGTTGCGT TAGGTGCTTT TTGCGGCGGG
TGTACCGCCC CTATGATTGG CGCTTTAGCT GGCGCCGCAG GGGCTGCCGC GAATGGGGGC
AACATAGTGA TAGGTGCATT TGTGGGGGCC TTTTCTGCGG GTGCTTTCGG CGAAATAGGC
AGCTCACTAC CCTTTGATTC TAGTCCGGTT GCCAATGTGT TCGCGAAGGG TGTCGTCGGC
GCCTTTACTA ATGGCATACA AGGGGGCGAG TTAGGCCATG GCTTCCTCAG TGCCGGTTTC
GGCGGCGTAG TCTCTGGTAA TATCATGGGC ATAGGTGGCG GCGCCGAAGC CTACATGCCA
GTACGCACCT TAATTGCGGC GATAGCCGGT GGCACAATCT CTAGGTTGAC TGGGGGTAAG
TTTGCTAACG GCGCCACAAC AGCTGGCTTT GCACACTTGT TTAATGCTGA GAGTGCGAAG
ACAGTTACAT CTGATAGTGA TTATGATGGT GAAAGTGAAC TCATTGGTGA AAAAAGAGCT
GCCTTTGAAA GTGAATTTAA AGAAATGCAA AAGGAAGTAC GAAATTTGAA ATCCTTTAGT
GGTAAAGGCG GATTAGACAA AGCGACAAAA TTTTTAGAAA AAAGAGTTCA CCAGTTAGCG
GTCAAATATG ATGTAGAGAT TAACGCCAAT TTAAGCCAAG CGACAAACGG CTTATGGGCT
ATCGATGGTA TAGGAACTAG TTATAACCGT CATGGAGTTA ATGTAATTGC TGCTAACATT
GGTACCGCTA AAGGTTGGAC TTGGAAAGCA AACTGGCATT CTCATGGTGC TGGTTATAAT
ACAAATATAA AGGCTGATAC TTACGTATCA AATCAAATGG CGCAGGCCGG ATATAATTTA
AGATGGTTTT ATACAACTCA AAGCGGTTTC TCAGCTGTTA CAAAGGAATT TTAA
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| Protein sequence | MFKKLAFISV CFLLEAISFK ANAISDGGIS KVYMGEGKFS LSIYSDPFTN QPMAVAPCDV
ETQSNKLVST SISINRAVPL PIDGNYPIDN CGTTKWYRTK VATLTPIPGE LLAGSNNSIT
QGLLDLGEYQ YRYQSCTASG YCQGYSTPLT ITVQPITKPE QLLLQTPSNS SVELTWSLPN
RISLRDQDSV VEQSVNGAAW TKVYVGKQTS IILPTSVGQY QFRIKTCSFA SCSDYALSNS
INRSGGTIEQ LNYSIHKDAN GNIYLVRPAT FIPISGDIFI PLFIADKGNV IVMTKNGASW
SLTEITYEEF IALQTNIVRE ASVRYENLTG NTSLDLIISL SGNFADSIVV NDINATTHEA
TYWDCSESVC VVAGSPEAVP AVQVAPIPSI NVASSSVGIT SGDFRVDESG AATFNMPLSF
PVGIASVTPQ MSLSYNSNSG NGELGIGSSI VGLSSITRCR STFEQDGVSG TLTLTKADRF
CINGRKLVLK KNTGEYGAAG SEYATEVDSF ISVVAVGSSG NGPDHFEVTH KDGRFETYGQ
AGNSQLFGFD GDTIETWYLS SQQDNLKLDD NKISYCYING GLNCRSTSML AGNNEILIDT
ISYSGNTVEF NYQHRTDVSQ GYSLGTLKEQ TLRLEDVLVK NHNNVPLTKY LTSYDYNVAS
GFSQLLSLVQ CNGSGNSCLQ PIRFNWKPAN PYLMSTGRCF STDPNPYVSD TGTCKLPKTD
GTFYGAKPID FNADGFVDLS YLVAEGSYYY LNFLLNNNGV LTGENAPHSN SSERLYFSND
NTPEWHIIDA NGDGYQDVLL KRKRTTKYTS QANPEQWFLY QNSGKTDHRE RLFTPVEFDL
PTFENKALVV AVYDYDGDGL ADVIAGRKDG TTYGYRKNNG NGFDAFVTLH VNGSSRNQVE
FDKSIYGDFN GDGKVDRIYK SRPNYTQCDP GRTCTVDWRL NGSFISTNMI NVVVGDINGD
GLSDLVYEYG VHNKIRTRYA TGKGFTDGET LSLEEGFKHV QLVDINADSR ADLVYYIPST
RRFKYHLSTA NGFSDSELLD ASVSAGTNVD QVFVVDINGD GLNDISYVDI SAKSLKIIRG
QSQPDNEVNK VSSIVDGYGQ STAIKYRTML DKTVYQVSQA QDSPFYTPEN LNLLNWGRGS
RIFNLLSPMS LVASTENRQQ RVNYKYYKAL LQGGGRGFLG FGHIESRYYK SGSEFKTTTS
YRQDFPFTGM AEVTFRYYGD ISLGSVINKL KLERTIAPFQ PVIEKVTENN SSISSASLLQ
SLSKKITQRQ YDLFGNITQE QVTTTDYANS NQVTTQVVDN EYGSTDEYKR FGRLTKTTVT
HGVTGQNTIM RESEFTYLSN LLLENEIIEP NGGNELYLQT HYNYDSLGNV IKTSVCSKHF
ETTCGAGQQN TNDPLSIHRS TVNNYDAQGR YLISSGNDLF IEARFKNFNA FGQPQTILDA
NNKAADVRYD DFGNEYFKRD GTGSSQHTTK AWSSDSASIA APSIAEDYFY VIGISAQGAP
SKWQYINDNG QMIAEVSQGF SEDIYQGHKY DAYGRKTHES IPSTLSVALY GPVWVRTGYD
VFDRVISTTT PERVTQFTYD NRVTSSTVSN AAGAIHTFSQ SSSKQIDAQG RLLYVIDNDN
QRLDYTYDAM GNLLTVTGVD QQVTTNQYDA KGYQKEWMND PDSGEWHYSY NALGELVSQT
DAKQQSISYT YDALGRTLSR TDAEGTAQWR FIDTRPHLLK QETTTGYVKQ YQYDDFGRQI
QTQLVLNAEQ QFFVESQTYD QFGRVFQKFD ASGDFQGIRY HYNDRGYVFK HQEAREGMNG
EVYYTINAIN ALGQITDESL GNGAHVVKNY SNLTGKLNGL AGSHQNQTYS FDGLGNLKQR
INYNRTVNGQ ALTEEFDYDS LNRLETVQLN GIETLGLTYE GNGNILSKSN VEAGARYQYA
TQAAQCNATT DVVAGPHALT QVGQLSYCYD ANGNQTRTFS GTNQTRAVSY TSFDKVSAIT
ANNETTRFTY GADRNRYKRE NIKEGKTRTS FYFGNIELNQ NELGTGYDLK RYIAGYGLQT
HYASTGVKQL QYLLKDHLGS IDVVLNDSNA IVGAMSFGAF GERRAAENWS PWSAAQFSNK
ISELRAISIR GFTGHEHVDH ANIIHMNGRI YDSYTGRFMQ ADPMVQAPEN GQNLNRYSYV
LNNPLSYTDP SGYFFSKLWD NIKPFVGVIV GVALGAFCGG CTAPMIGALA GAAGAAANGG
NIVIGAFVGA FSAGAFGEIG SSLPFDSSPV ANVFAKGVVG AFTNGIQGGE LGHGFLSAGF
GGVVSGNIMG IGGGAEAYMP VRTLIAAIAG GTISRLTGGK FANGATTAGF AHLFNAESAK
TVTSDSDYDG ESELIGEKRA AFESEFKEMQ KEVRNLKSFS GKGGLDKATK FLEKRVHQLA
VKYDVEINAN LSQATNGLWA IDGIGTSYNR HGVNVIAANI GTAKGWTWKA NWHSHGAGYN
TNIKADTYVS NQMAQAGYNL RWFYTTQSGF SAVTKEF
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