36 homologs were found in PanDaTox collection
for query gene Sdel_0646 on replicon NC_013512
Organism: Sulfurospirillum deleyianum DSM 6946



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013512  Sdel_0646  DNA-directed RNA polymerase, omega subunit  100 
 
 
71 aa  144  5e-34  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_008599  CFF8240_1213  DNA-directed RNA polymerase subunit omega  60.56 
 
 
73 aa  94.4  5e-19  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  n/a   
 
 
-
 
NC_009715  CCV52592_0482  DNA-directed RNA polymerase subunit omega  60.29 
 
 
71 aa  88.2  4e-17  Campylobacter curvus 525.92  Bacteria  normal  n/a   
 
 
-
 
NC_009802  CCC13826_0501  DNA-directed RNA polymerase subunit omega  61.76 
 
 
71 aa  86.7  9e-17  Campylobacter concisus 13826  Bacteria  normal  0.222058  n/a   
 
 
-
 
NC_003912  CJE1409  DNA-directed RNA polymerase subunit omega  57.14 
 
 
74 aa  85.1  3e-16  Campylobacter jejuni RM1221  Bacteria  normal  0.408548  n/a   
 
 
-
 
NC_009707  JJD26997_0452  DNA-directed RNA polymerase subunit omega  57.14 
 
 
74 aa  85.1  3e-16  Campylobacter jejuni subsp. doylei 269.97  Bacteria  normal  0.133952  n/a   
 
 
-
 
NC_008787  CJJ81176_1289  DNA-directed RNA polymerase subunit omega  57.14 
 
 
74 aa  85.1  3e-16  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  normal  0.0171215  n/a   
 
 
-
 
NC_012039  Cla_0616  DNA-directed RNA polymerase subunit omega  57.97 
 
 
72 aa  82.8  0.000000000000002  Campylobacter lari RM2100  Bacteria  normal  n/a   
 
 
-
 
NC_009714  CHAB381_1282  DNA-directed RNA polymerase, omega subunit  58.57 
 
 
74 aa  76.3  0.0000000000001  Campylobacter hominis ATCC BAA-381  Bacteria  normal  0.587264  n/a   
 
 
-
 
NC_007947  Mfla_0049  DNA-directed RNA polymerase subunit omega  44.23 
 
 
70 aa  50.4  0.000009  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_010577  XfasM23_0755  DNA-directed RNA polymerase subunit omega  53.85 
 
 
111 aa  50.1  0.00001  Xylella fastidiosa M23  Bacteria  normal  n/a   
 
 
-
 
NC_007575  Suden_0718  RNA polymerase Rpb6  44.29 
 
 
72 aa  48.9  0.00002  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_007520  Tcr_2143  DNA-directed RNA polymerase, omega subunit  53.19 
 
 
74 aa  47.8  0.00005  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_013422  Hneap_0034  DNA-directed RNA polymerase, omega subunit  46.43 
 
 
107 aa  47.4  0.00006  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_010513  Xfasm12_0842  DNA-directed RNA polymerase subunit omega  53.85 
 
 
98 aa  47.4  0.00007  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_0252  DNA-directed RNA polymerase, omega subunit  45.1 
 
 
121 aa  47  0.00009  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.00381696  normal 
 
 
-
 
NC_011891  A2cp1_3731  DNA-directed RNA polymerase, omega subunit  48.15 
 
 
88 aa  46.6  0.0001  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_3590  DNA-directed RNA polymerase, omega subunit  48.15 
 
 
88 aa  46.6  0.0001  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_3657  DNA-directed RNA polymerase, omega subunit  48.15 
 
 
88 aa  46.6  0.0001  Anaeromyxobacter sp. K  Bacteria  normal  0.284289  n/a   
 
 
-
 
NC_009675  Anae109_3711  DNA-directed RNA polymerase, omega subunit  46.3 
 
 
88 aa  43.9  0.0007  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_0635  DNA-directed RNA polymerase, omega subunit  48 
 
 
70 aa  43.9  0.0008  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_007969  Pcryo_2004  DNA-directed RNA polymerase subunit omega  52 
 
 
86 aa  43.9  0.0008  Psychrobacter cryohalolentis K5  Bacteria  normal  normal  0.159154 
 
 
-
 
NC_007204  Psyc_1724  DNA-directed RNA polymerase subunit omega  52 
 
 
86 aa  43.9  0.0008  Psychrobacter arcticus 273-4  Bacteria  normal  normal  0.624474 
 
 
-
 
NC_007492  Pfl01_5550  DNA-directed RNA polymerase subunit omega  41.82 
 
 
87 aa  43.1  0.001  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.374891 
 
 
-
 
NC_007298  Daro_3844  DNA-directed RNA polymerase subunit omega  39.22 
 
 
68 aa  43.1  0.001  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_2285  DNA-directed RNA polymerase, omega subunit  50 
 
 
68 aa  43.5  0.001  Geobacter lovleyi SZ  Bacteria  normal  0.153999  n/a   
 
 
-
 
NC_011071  Smal_3259  DNA-directed RNA polymerase subunit omega  48.08 
 
 
99 aa  43.1  0.001  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.546002  normal 
 
 
-
 
NC_008340  Mlg_2443  DNA-directed RNA polymerase subunit omega  47.83 
 
 
107 aa  42.4  0.002  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.604938  normal  0.307716 
 
 
-
 
NC_007484  Noc_1213  RNA polymerase, omega subunit  50 
 
 
86 aa  42.7  0.002  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.492791  n/a   
 
 
-
 
NC_013889  TK90_2002  DNA-directed RNA polymerase, omega subunit  45.45 
 
 
91 aa  41.6  0.003  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
NC_008609  Ppro_2400  DNA-directed RNA polymerase, omega subunit  42.31 
 
 
70 aa  40.8  0.007  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0782645  n/a   
 
 
-
 
NC_007517  Gmet_2326  RNA polymerase, omega subunit  47.83 
 
 
69 aa  40.8  0.007  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.00000000968364  normal 
 
 
-
 
NC_002939  GSU2237  DNA-directed RNA polymerase, omega subunit  47.83 
 
 
69 aa  40.8  0.007  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_3212  DNA-directed RNA polymerase, omega subunit  47.83 
 
 
68 aa  40.4  0.008  Geobacter bemidjiensis Bem  Bacteria  hitchhiker  0.00000144072  n/a   
 
 
-
 
NC_009483  Gura_3161  DNA-directed RNA polymerase, omega subunit  44.9 
 
 
69 aa  40.4  0.008  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.000980407  n/a   
 
 
-
 
NC_009513  Lreu_1175  DNA-directed RNA polymerase, omega subunit  45.83 
 
 
72 aa  40  0.01  Lactobacillus reuteri DSM 20016  Bacteria  hitchhiker  0.000000000347215  n/a   
 
 
-
 
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