Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_4002 |
Symbol | |
ID | 3967421 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 5038294 |
End bp | 5039379 |
Gene Length | 1086 bp |
Protein Length | 361 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 637923099 |
Product | AraC family transcriptional regulator |
Protein accession | YP_529469 |
Protein GI | 90023642 |
COG category | [K] Transcription |
COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 35 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.24994 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTAAATG CAGCTAATAC GGTTAATAGC AAGATGGCTT ATACACAGGC GGCCTATTCG CAGGCGCTAA GCTCTAGCGC TCAAACGCAC TACCTGTTAC CCAGCGATAA AACCATCGTC GCGCATTGGC AGCCAGCCAT ATTGTTAAAT TTAATGTGCA ATAGTTTGGC TAATGAAGAA GCTATTGCGC TTTCTAATAA GCTTTTAAAG GGCACGCGCC TTTTTTATAG TGATTTTAGT AAAACAAACC TGTTTATTAG CCCGGAGCAG TTTCAACGTT TTATTGTAAA TTGCAATGCT ACCCCCAACC AATCCGATTT GGCATTTAGG TTTGGCCAAC GTTTATTGCC CGGTCATTAC GGTGATTTTT CCCACGGCTT AAACCAAGTA AACAGCGTAT TCGCTGCCGC AGAATTAATT CAAAAGTGCG CACATGTTTT CTCCCCATTG CTTACACCTA AGGTTAATGT GTATGCAACA GAATTAACAA TTAGCTTTTA TTCAAGCTAT GGCTGCGGCA ATAGCCACAG GTTTGTGTGC GAAGCATTTA TTTTTGCAAT TAAAAACTGG CTAGAGCAAC AACTGGGCAG GCACTTGCCT TGGCAATTTG AGTTTAACTA CACCGCACCA GAAGCCATAG AAAATTACGA AGTGTACCTA GGGGATAACC TTAAGTTTAA CCGACCCGTT ACCGCTATTC GCTTACCCAT TGAATATGCC CATAGCAGCT GGCAAGTAAG CGAGAATTTT ACTTTACCCT GCGCAGCCAC CCCAGTTAGC TTGCTAAATT TAGTGCGCCA ATTACTAAGA AACAACATAC AAGCCAACCC GAGTTTAGAG TGGCTTGCAC AACAGTTAGA CATTAGCCCC GCCACATTAA AACGACGCCT TAAAGCCTGC AATACGCAGT TTCGCGATTT ACTGAGCGAA ATTCGATTAG AAGTAGCGGT AGAACTTTAT CAGCAACAAC ATTTTAGCAG CGATGCCATT TGCCAATACT TGGGCTTTTA CGACGAATCT AATTTGCGCC GATTTTTTAA GCGCACCACC GGCCAAACAC ATACCCAGTA TTTGGCCTTA ACCTAG
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Protein sequence | MLNAANTVNS KMAYTQAAYS QALSSSAQTH YLLPSDKTIV AHWQPAILLN LMCNSLANEE AIALSNKLLK GTRLFYSDFS KTNLFISPEQ FQRFIVNCNA TPNQSDLAFR FGQRLLPGHY GDFSHGLNQV NSVFAAAELI QKCAHVFSPL LTPKVNVYAT ELTISFYSSY GCGNSHRFVC EAFIFAIKNW LEQQLGRHLP WQFEFNYTAP EAIENYEVYL GDNLKFNRPV TAIRLPIEYA HSSWQVSENF TLPCAATPVS LLNLVRQLLR NNIQANPSLE WLAQQLDISP ATLKRRLKAC NTQFRDLLSE IRLEVAVELY QQQHFSSDAI CQYLGFYDES NLRRFFKRTT GQTHTQYLAL T
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