Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_3031 |
Symbol | |
ID | 3967695 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 3871493 |
End bp | 3872512 |
Gene Length | 1020 bp |
Protein Length | 339 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 637922128 |
Product | AraC family transcriptional regulator |
Protein accession | YP_528500 |
Protein GI | 90022673 |
COG category | [K] Transcription |
COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.000013989 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.000160975 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACCGCCG CACCTATCAA TACTAATCCG AGCAGCCGCG CCCTTACGGC CCCAGCACTC GAGGCGCTAG CGAACTACGC AGGGTGCAGA AACGCCACAA TCCACAGCAA AGGCGCAAAA ACAGACACGT TAATTAACGG CCATTTCACC TTAAAGCGGG AGTTCGATGG CATATTGGTG CATGCCTGCA ATATGGAAGA ACAAAAAGAT GCCCTAGTAG CCAGCCAGCA ACACGCTGGG CTTACCTTTG GTGTATTGAT AGAAGGGAAA ATAACGTTTG GCTTTAATGG AGAGTTCGGC ACTATAGAAG CTGCAAACGG CGCCCAGGGT TGGGCCACTA ACCTCACCCA AAACGCCGCA TGGCAGCGCA AACTGACCAA CAAGCAGCAA GTGATTAAAC TTGTGGTTTC TGTACCGCCG CAATGGATAA AACAGCACCT GTGGCAAAAC CCCGCCCCAG CCTTTTTAAA TAGGTTTATA AGCACCCATT TAGCGCGAAC ACATTGGCTG GCATCCGGCA GTTTAGTGCG CCACGCAAAA GCGGTAATGA GCAGCCACAG TAATAGCCCC AGTCAAGCCC TGCACTTCCA CGCCAATGTA CTCGCATTTA TTGCGCAAGC ACTGGACGAC ATTGAAGCCA GCGGCGAGCG CATTTTTAAC TTGCACAACC CTAACCGAAC CAGCCGGAGC CTTAGCAGCC AAGCTATAAA AGTGCAGCAG CATTTAGAGC ACTGCATTAA TGAGCTGCAG CCGGGTGCTC ACATTCAATT GGAAGATATA TCACATGCGC TGGGCATGAG TGTAAGCAAA TTGCAGCGTT TATCGAAAGC ACACTTTGGC TGCACTATTG CCGAGTACAT TCGTATTCGT CGCCTAGAAA AAGCGCGCCA CGAAATTCAG CACAACAATT TAAGTATTGG CGAAGCTGCT TTTTTAGCCG GCTATAATCA CAGGTCCAAC TTCTCTAAGG CTTTCAAACA ATATTTCAAT TTATGCCCCG GCGACATAGC GCCGCAGTAA
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Protein sequence | MTAAPINTNP SSRALTAPAL EALANYAGCR NATIHSKGAK TDTLINGHFT LKREFDGILV HACNMEEQKD ALVASQQHAG LTFGVLIEGK ITFGFNGEFG TIEAANGAQG WATNLTQNAA WQRKLTNKQQ VIKLVVSVPP QWIKQHLWQN PAPAFLNRFI STHLARTHWL ASGSLVRHAK AVMSSHSNSP SQALHFHANV LAFIAQALDD IEASGERIFN LHNPNRTSRS LSSQAIKVQQ HLEHCINELQ PGAHIQLEDI SHALGMSVSK LQRLSKAHFG CTIAEYIRIR RLEKARHEIQ HNNLSIGEAA FLAGYNHRSN FSKAFKQYFN LCPGDIAPQ
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