| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2561 |
|---|
| Symbol | |
|---|
| ID | 3968727 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 3251480 |
|---|
| End bp | 3251950 |
|---|
| Gene Length | 471 bp |
|---|
| Protein Length | 156 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637921659 |
|---|
| Product | ribosome recycling factor |
|---|
| Protein accession | YP_528033 |
|---|
| Protein GI | 90022206 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4967] Tfp pilus assembly protein PilV |
|---|
| TIGRFAM ID | [TIGR02523] type IV pilus modification protein PilV
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 0.19815 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.374667 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTAAGT GCGTCAAATC ACAGAACGGT TCATCATTGA TCGAAGTTAT GGTTGCTCTA
TTTGTGCTGG CAATTGGTAT GCTTGGAGTG CTAGCCATGC AAACGCGTGC CATTCAGATG
AATCAGAACT CTGCACAATA TTCGCAAGCC ACAACCTTGG CAGCCGATAT ATACGAGGCA
ATGCTAACCT CTCCCTCTTC ACCTGGTAGT TACACCATCA ACTTTGATGA CGCAATCCCT
GCTGCGCCGG CTTGTACGGC AAGCACATCT GAATGCTCGC CGTCTCAAAT CGCAGCGTGG
AATAAGCATC ACTGGTTGAC GAATGTACAG AACCTGTTAC CAGGTGGCGA AGGCCAAATA
GAGGCATCTG GCGATAAAGA GTATGTAATT AGTATTCGTT TTGTAACTGG GTACGATAAA
GATACCGACG AGCCTGTGTA TGAGCAAGTC GATTTGGATG TGAGAATTTA G
|
|---|
| Protein sequence | MVKCVKSQNG SSLIEVMVAL FVLAIGMLGV LAMQTRAIQM NQNSAQYSQA TTLAADIYEA
MLTSPSSPGS YTINFDDAIP AAPACTASTS ECSPSQIAAW NKHHWLTNVQ NLLPGGEGQI
EASGDKEYVI SIRFVTGYDK DTDEPVYEQV DLDVRI
|
|---|
| |