Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_2452 |
Symbol | |
ID | 3965399 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 3099529 |
End bp | 3100755 |
Gene Length | 1227 bp |
Protein Length | 408 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 637921543 |
Product | hypothetical protein |
Protein accession | YP_527924 |
Protein GI | 90022097 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.883759 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAAAATA AACATATTGT TTTTTTAGTT GTGCTGGTGC AGTTCATTAA TGCATTAGAC TTTGTATTAG TCATGCCCAT GGGCCCAGAT TTGGCCCTTG GGCTGGGGTT TGGATTGGAG CATATCTCTT GGGTTGCGAG TAGTTACACC ATATCTGCTG CCGTGGTATC GCTTTTATCT GTTATGCATT TAGATAAATT CGATCGCAAA AAAGTACTAG TGTTCTCGCT TATCGGTATG CTGTTATCGA CTGCGATGGG CGGGCTATCT ACAGACCTTA CTAGCTTGCT GTTGTCCCGT GTGTTGGCTG GCGGGTTTGG AGGTATGGCG ATCTCTATTG GTGTATCTAT TGTTGCCGAT GTGGTGCCGC AAGAGCAGCG TGGTAAAGCC TTGGGTATGG TGATGGCGGG CTTTCCGTTA TCGGCTATTT TAGGTATTCC GCTCGCACTT TATATTTCTG ATCAAACCAG TTGGCAAAGT GCATTTTACC TATTAGCTGC ATTTATTTTT GTAGTGCTAC TCACCATTGT TTGGCAGTTG CCAAAACTCG TGGGGCACCG CGAAGCGAAT CAAGGGTTGT TTGATTTGCG AGAGCTTATT CGACGACCAG AGATGGGCAT AGGTATTTTG CTTGTTGGAA TATGTGTATT TCCAGCATTT TTAATTGTGC CTCATGTGTC AACCATTAAT CAATTTAACT ATGGTTTTCC TCGGGCAGAT TTATCTTACC TGTATTTAGC TACCGGAATT ATTAATCTTA TTTTTGTGTT AATAACGGGC AGGTTAGCGG ACAAGTATTC GGCACTTACG GTGGGGTCTT TCTGGGCAGT AGTGTTGGCC GCAGATATTA CGTTATGGAT GATCTTTGCT GTGTCGTGGC CGGTGGTAAT ACTGCATTTA ATATTCTTTG TGAGTTTTAC CGCGTTAATG ATTCCATCTG CGTCTTTAGC CAGCAAAATC CCCGCGGCTA ACCAACGAGC AGGTTTTAGT GCGCTGCAAT CGTTCTTCCA ATATCTGGCA ACAGGGCTCG CCGCGTCGGC TTCATTTTTT GTTATTCATG CCGATGCTGA AGGCAACTTA ATGAACCTTA AACAGTTGGG GTTAATTGCG ATTGCAAGCT TAGTGCTTAT TCCGGTGGCT ATTTGGTTTA TTGAGCGGCG ATTGAAGCTA GCGAGCAAAC AGCGTTCGGT GGATGTCTCA CCGGCTGTAA ACGATGCGGC GATATAA
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Protein sequence | MQNKHIVFLV VLVQFINALD FVLVMPMGPD LALGLGFGLE HISWVASSYT ISAAVVSLLS VMHLDKFDRK KVLVFSLIGM LLSTAMGGLS TDLTSLLLSR VLAGGFGGMA ISIGVSIVAD VVPQEQRGKA LGMVMAGFPL SAILGIPLAL YISDQTSWQS AFYLLAAFIF VVLLTIVWQL PKLVGHREAN QGLFDLRELI RRPEMGIGIL LVGICVFPAF LIVPHVSTIN QFNYGFPRAD LSYLYLATGI INLIFVLITG RLADKYSALT VGSFWAVVLA ADITLWMIFA VSWPVVILHL IFFVSFTALM IPSASLASKI PAANQRAGFS ALQSFFQYLA TGLAASASFF VIHADAEGNL MNLKQLGLIA IASLVLIPVA IWFIERRLKL ASKQRSVDVS PAVNDAAI
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