Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_2283 |
Symbol | |
ID | 3967959 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 2903787 |
End bp | 2904872 |
Gene Length | 1086 bp |
Protein Length | 361 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 637921374 |
Product | methyl-accepting chemotaxis sensory transducer |
Protein accession | YP_527755 |
Protein GI | 90021928 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.00902179 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAAAAAG CATTTCTTAT TTCGCTAGGC CTACTATTCT TAGTTGCATT TGTAGGTACA GGTGTATTTC TATATAAAAA ATCGCAGCAA AAGCCAGTAA TTTTTAAAAC CGCGCAAGCT GAAACGCGAG ATATTATTAG AAAAACAATC GCCACCGGTA AAATTGTGCC GCGCAAAGAA GTGGAGATTA AATCTCAGGT TTCAGGGGTG GTAGATCAAG TATATGTAGA AGCTGGCGAG TATATTGAAA AAAATGCGCT TATCGCCAAA ATACAAATAA TACCGAATGT TGAACGGCTA AACGCAGCAG AATCACGCTT GCAATCTGCC ACCATTAGCT TTGAAGACGC AGCCCGCGAA CTGCAACGTC AAAAACAACT GTTCGAAGAC CAGCTTATAT CCGAAGCGGA ATACCGAAAA TACCTACTTG AATTTAATTT AAAGCAAGAA GCGGTGTCGT CTGCAGAAAG TAACCTCGCC ATTATTCGTG AAGGCGCATC TAAAAAAGCT GGGCAAGTCT CTAACCTTGT GCACGCTACG CTATCGGGCA CCATACTCGA TATACCCGTA AAAGAAGGTC ATTTTATAAC GGAAACTAAC ACTTTTAACG CCGGCACCAC TATTGCCACC ATTGCCAATA TGCAGGATCT AATTTTCGAA GGTACTGTGG ACGAATCGGA AGTGGGTAAA ATCGCTGAAG GTATGGAGCT GGTATTGAAC ATTGGCGCCT TAGAAACAGA ACAATTTACC GCCGAACTTG AGTATATATC CCCTAAAGGC GTGGATGACC AAGGCACCAT TAAATTTGAA ATACGCGCTG CAGTAAAATT AAAAGACGAT AGATTTTTAC GTGCAGGCTA CAGCGCAAAT GCCGATATAG TGCTAGACCG TCGCGAGCAG GTACTGGCCC TAAACGAACG CTTCTTACAA TTCGACGATA AAACACCCTA TGTCGAAGTA GAAACCGCCC CACAAACCTT CGAGAGGCGC GACATAGAAA CAGGCTTATC GGACGGTATA TTTATAGAAA TACTATCGGG GCTAAGCCTA ACAGACAAAA TAAAAGAACC CATTATCGGG CAATAA
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Protein sequence | MKKAFLISLG LLFLVAFVGT GVFLYKKSQQ KPVIFKTAQA ETRDIIRKTI ATGKIVPRKE VEIKSQVSGV VDQVYVEAGE YIEKNALIAK IQIIPNVERL NAAESRLQSA TISFEDAARE LQRQKQLFED QLISEAEYRK YLLEFNLKQE AVSSAESNLA IIREGASKKA GQVSNLVHAT LSGTILDIPV KEGHFITETN TFNAGTTIAT IANMQDLIFE GTVDESEVGK IAEGMELVLN IGALETEQFT AELEYISPKG VDDQGTIKFE IRAAVKLKDD RFLRAGYSAN ADIVLDRREQ VLALNERFLQ FDDKTPYVEV ETAPQTFERR DIETGLSDGI FIEILSGLSL TDKIKEPIIG Q
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