Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_2020 |
Symbol | nhaB |
ID | 3967283 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 2544050 |
End bp | 2545549 |
Gene Length | 1500 bp |
Protein Length | 499 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 637921108 |
Product | sodium/proton antiporter |
Protein accession | YP_527492 |
Protein GI | 90021665 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG3067] Na+/H+ antiporter |
TIGRFAM ID | [TIGR00774] Na+/H+ antiporter NhaB |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 0.974157 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCGCAGT CCATGACTAA CGCGTTTTGG CACAATTTTC TGGGCCACAC CCCAAATTGG TATAAGAAAA CAATTTTAGG TTTCTTGGTT ATCAATATTG TTCTCTCCCA AGTTAGTCCT TTTTTGGCTG GTTGGGCGCT AATTATTGAG TTCATTTTTA CTCTTGCTAT GGCTCTCAAG TGCTACCCTT TGCAGCCGGG CGGCTTATTG GCCATTCAAG CTGTGCTACT TGGGCTAACC AGCGCAGACT CGGTATACCA TGAAGTACTC GCCAACTTTA AAGTAATTCT GCTACTTATG TTTATGGTGG CAGGCATCTA CTTTATGAAG GACATGCTTC TTTTCGTGTT TACCAAGATC TTGCTTGGTA TTCGCTCGAA ACTGCTTCTC TCTTTATTGT TCTCATTTGT TGCAGCAGTG CTTTCTGCCT TTTTAGATGC GCTAACAGTA ACTGCCGTAC TCATCGCTGT GGCTGTAGGT TTTTACGCGG TTTACCATCG CTTTGCCTCA GGTAGTGGGC ACGGTAACGA CCACGACCAC TCCGCAGATG ATAATGTGCA CGATTTGCAC CGCGAAGATT TAGATACTTT CCGCAGCTTT TTGCGCAGCC TTATTATGCA CGGTGCAGTA GGTACCGCCC TAGGTGGCGT TGCTACCTTA GTTGGCGAGC CTCAAAACTT GCTTATTGCA GAAATTGCTG GCTGGAACTT CATTGAGTTC TACTTGGTTA TGGCACCTAT TTCTGTGCCT GCTTTAATTG GTGGTTTGCT CACCTGCGCA ATACTAGAAA AGACAGGTAT CTGCGGCTAC GGAGCCAAAT TACCCGATAG CGTGCGCCAA ATATTGGTCG ATTTTGATAA AAAGGAAACG GCAAAGCGCG GGTTTGGCGA TAAGGCGCAA TTACTTGTAC AAGCGGTTGT CGCAGTAGTG CTTGTATTTG CATTAGCCTT GCACCTAGCG GAAGTTGGCC TTATTGGTTT GCTTATTATT GTTCTGCTAA CCGCCTTTAA CGGCATTACC GATGAACACC GCATTGGTCA CGCTTTTGAA GAAGCGCTGC CCTTTACCGC GCTGCTAGTG GTGTTTTTCG CAGTTGTGGC TGTTATCCAC GACCAGCATT TGTTTACACC GGTTATTGAT TACGTTTTAG CCATGGAACA AGGTGCCCAG GCTCCTATGT TCTTTGTGGC TAACGGCGTG TTATCTATGA TTAGTGATAA TGTGTTTGTT GCTACCGTGT ACATTAACGA AGTAAAAGCG GCATTCGATG CGGGTACTAT TTCTCGTGAG CATTTTGATG TACTTGCTGT AGCAATTAAT GCCGGCACCA ACCTACCTAG CGTGGCGACA CCAAACGGCC AAGCAGCATT TTTATTCCTG CTCACTTCTG CTCTTGCCCC GCTTATTCGC CTTTCGTACG GCAAAATGGT AATAATGGCG CTGCCCTACA CAATCGTTCT TGGTGCGGTT GGCCTTGGGT CTGTAATACT CTTCTACTAA
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Protein sequence | MPQSMTNAFW HNFLGHTPNW YKKTILGFLV INIVLSQVSP FLAGWALIIE FIFTLAMALK CYPLQPGGLL AIQAVLLGLT SADSVYHEVL ANFKVILLLM FMVAGIYFMK DMLLFVFTKI LLGIRSKLLL SLLFSFVAAV LSAFLDALTV TAVLIAVAVG FYAVYHRFAS GSGHGNDHDH SADDNVHDLH REDLDTFRSF LRSLIMHGAV GTALGGVATL VGEPQNLLIA EIAGWNFIEF YLVMAPISVP ALIGGLLTCA ILEKTGICGY GAKLPDSVRQ ILVDFDKKET AKRGFGDKAQ LLVQAVVAVV LVFALALHLA EVGLIGLLII VLLTAFNGIT DEHRIGHAFE EALPFTALLV VFFAVVAVIH DQHLFTPVID YVLAMEQGAQ APMFFVANGV LSMISDNVFV ATVYINEVKA AFDAGTISRE HFDVLAVAIN AGTNLPSVAT PNGQAAFLFL LTSALAPLIR LSYGKMVIMA LPYTIVLGAV GLGSVILFY
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