Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_1570 |
Symbol | |
ID | 3965098 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 2016225 |
End bp | 2018225 |
Gene Length | 2001 bp |
Protein Length | 666 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 637920648 |
Product | Signal transduction histidine kinase-like |
Protein accession | YP_527044 |
Protein GI | 90021217 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.733845 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGCGGGGGG GGGGGCGGCG CTCCCCCCTT GTTTTTGCTT ACGATAAACC CGGCTTAACG CAATATATGT TTCGATTTCA AAACTTGTCT ATTCGTACAA AACTGGTAAG CATTATTTTG CTGGGTATGG CCAGTGCTAT GACGGTTGCC TTGGCGAATT TTATATTCTT CGAGCTGTAC TCCGCCAAGC GAAATTTAAC CGATGAGCTC ACGGTGTTAT CCCGCATTAC TGCTGCGCGA AGTGGAGCGG CGCTAACCTT TGGCGACATT AAAAAAGCGC AAGAGAACCT TTCGCAATTG GGCATTTTAG ATAGTGTGCA AGCCGCTTGT ATCTACGATG CTGATGACAA CCTATTTGCC GCTTATACAA GGCATAAACC AAGTAACTTT CTGTGCACAA GCACGCCAGC GTATATAGAA ACAGCACAGT TTGATGACCG TATAGTGGCG GTGGCCGATA TTACTCACCG CAATGTGTCG TTAGGCAAAA TTATTGTACT AAGCGATTTA AGCCGTATAG AGCGCAAAGC TAAAAATTGG GTCAAGTTAG CGGGGTTAAT GTTTTTAATT GCCACCATTG TAGTGGTGGT GATGGCTATG CGAATGCAAT CTGCTGTTGT GTCACCGCTC AAACATTTAA TGGAAGTTAT GGCGCGAGTG CGCGATGAAA ACGATTTGGG TATTCGTGCA GTGCCGGCTG GCAACGATGA GCTGGGTAAG TTAGTCGACT CGTTTAACGA TATGCTGGCG ATGGTGGAAT CCAGCCGAAT GGATTTAGAA ATTGTGTATA ACGAGCTGGT TTTTCGCAGT ACAAAAGCCG AAACCACGGC GGTAGAGTTA GAGGCGCGCA ACGAACAAAT TAAAGAGCTA TTGAGTGGCG CCGCGCACGA TTTACGCCAG CCGTTACAGG CGATGGCTAT TTTTGTCGAT ATGCTGCAGT TTCAATTGGA AGACGAAAAA TACCTAAACC TAACCGAAAA ATTAAAAGCT GCCATGCACA ACTTGCAGGC TATGTTTACC GATATTTTAG ATTTTTCGCG GCTCGATCAT AAAGCCGGTA CTGCAGAGTT ACAGGATATA CATTTAGAAA AACTATTCGG CAAATTACAG TTGGAGTTTG AGGTACTTAC CTTACGTAAG GGAATCCAGT TTCGCACCCA TGTTAATGCA ATAAGTGTTC GCGGTATTTC TGGTGTAATA GAACGTATTG TACGCAACTT GGTGAGTAAC GCCGTTAATT ACACCGACAC CGGTGGAGTA CTTTTAGCAG CACGTAAAAA GCGCGATTGT GTGGTGATAG AGGTGTGGGA TACCGGCATA GGAATCCCTG AAAATCGCAT AGATTCTGTA TTTAAAAAGT TTGAGCAGGT AGACAATAAA GGGGTTTCAT CCCACAAGGG TTACGGTTTG GGGTTGGCCA TCGTAAAGCA ATTTGCCGAT ATGATGGGCT ATAAATTAGA AGTGGTTTCG CGAGAAGGGA AAGGCAGTTG TTTCCGCATG GTCATACCTA ATGTAGCGAA AGAAAACGCG CAAAGCCGTT CGACGGTTGC GTTTTCTAGC GATGAAATTT TTGCCGACAA TTACCGCCAA ACCGTATTGT ATGATTCCGA CCAACTCGCC AATACCATGT TAAAAACCCA TGTTATTTTA GTGGATGATG AACCGGCTAT TCGCTCTATT CTTGCATTAC TTTTAAAGTC GTGGGATATG GAAGTAACCG AGTTTGCTGG CATGCAGGGC GTAGAAGATT ACTTTGGCTC AAGCGACTTT CTCGACCCCG ATATCATTAT TAGCGATTAT CAGCTTGGCC CTAATTTAAC AGGCGATGCC GTAATAGAAG AAATAAGAAT GGCCGTGGGC ATAGACGTGC CCGCACTCAT TGTTACGGGG AACGCGTCGC CGGCTATTCA CGAAGAAATT AGAGCAAAGG GGTTTGATTT ACTGCTAAAA CCGGTGGGAG CTGCACAATT GCGAACAGTT TTACATCGTA TGCTGGAATA G
|
Protein sequence | MRGGGRRSPL VFAYDKPGLT QYMFRFQNLS IRTKLVSIIL LGMASAMTVA LANFIFFELY SAKRNLTDEL TVLSRITAAR SGAALTFGDI KKAQENLSQL GILDSVQAAC IYDADDNLFA AYTRHKPSNF LCTSTPAYIE TAQFDDRIVA VADITHRNVS LGKIIVLSDL SRIERKAKNW VKLAGLMFLI ATIVVVVMAM RMQSAVVSPL KHLMEVMARV RDENDLGIRA VPAGNDELGK LVDSFNDMLA MVESSRMDLE IVYNELVFRS TKAETTAVEL EARNEQIKEL LSGAAHDLRQ PLQAMAIFVD MLQFQLEDEK YLNLTEKLKA AMHNLQAMFT DILDFSRLDH KAGTAELQDI HLEKLFGKLQ LEFEVLTLRK GIQFRTHVNA ISVRGISGVI ERIVRNLVSN AVNYTDTGGV LLAARKKRDC VVIEVWDTGI GIPENRIDSV FKKFEQVDNK GVSSHKGYGL GLAIVKQFAD MMGYKLEVVS REGKGSCFRM VIPNVAKENA QSRSTVAFSS DEIFADNYRQ TVLYDSDQLA NTMLKTHVIL VDDEPAIRSI LALLLKSWDM EVTEFAGMQG VEDYFGSSDF LDPDIIISDY QLGPNLTGDA VIEEIRMAVG IDVPALIVTG NASPAIHEEI RAKGFDLLLK PVGAAQLRTV LHRMLE
|
| |