Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_0650 |
Symbol | |
ID | 3964979 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 821795 |
End bp | 823471 |
Gene Length | 1677 bp |
Protein Length | 558 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 637919711 |
Product | RhoGEF guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases-like |
Protein accession | YP_526124 |
Protein GI | 90020297 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5422] RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.75821 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCAACCC AAGGTAAACC TTGTTTAAAA AAATTGTGGC CGGCGTTAGC GCTTGCTGCT GCTGTAGCTA GTCCGAACGC ATTTTCTGCG TGTGAGTATG TTGTATCCAA TCAATGGGAT TCAGGGTATT CGGCGACTAT TAAAATTCAT AACGATACAA ATTCAACCAT TAATGGTTGG AATGTGAATT GGCAATATAG CGGCGATAAC CGCGTAACCA ATTTATGGAA TGCGGCGTAT GTAGGTAGTA ACCCATACTC TGCAAGTAAC CTTTCGTGGA ATAGCACCGT TGGTGCCGGT CAAACTATCG AGTTTGGTTT CCAGGGGGCC AAAAACGGCG GCAGTGCCGA AGTGCCCGTT GTTACGGGTG ATGTGTGTAG TGGTGGTGGC AGTTCTTCTG GTTCATCATC TAGCTCTTCA TCGAGTAGCT CTACAGGTAG TTCTACAAGC AGTTCTTCAA GTAGCTCTTC AAGTAGTTCC ACAGGCGGTT CCACAAGCAG TTCATCAAGC TCGTCTTCTA CCGGTGGCAA TGGTGGTGCA CAGCAATGCA ATTGGTACGG TGAAATTCGC CCACTGTGTA ACAATCAAGA TAGCGGCTGG GGTTGGGAAA ATCAGCAAAG CTGTATCGGT CGCGACACCT GTTCCAACCA AAGTGGCAAT GGCGGTATAA TTGGCGGTAG TTCTTCTAGC TCGTCCAGTT CTTCAACCGG TTCATCGAGC AGCTCTTCGA GTTCTTCGTC AAGCTCATCC AGCTCTTCTA GTTCAACGTC AAGCTCATCC AGCTCTTCTA GTTCAACGTC TTCAAGTTCT TCGTCGAGTT CATCATCTAG CTCTTCAAGT TCTACAAGTA GCTCGTCGTC TTCGTCTAGC TCATCGAGTA GTTCTTCAAG CAGTTCGACG TCTAGCAGTA GTTCTTCATC TTCGAGCTCT AGCAGTTCAT CTAGCTCTTC AAGCAGTTCT TCTAGTAGCT CTTCTTCAAG TGGTGGCGGT GTTATTTTTA GCGCAGACTT CGAAAGCGAT AGCGATAGTA CACAGCCAGC AGGTTGGGAT AATTTTATTG GCTGGCGTCA AAACGGGCCA AACCCAAATG GTTCGACATT TGCGTTGGTG GAATCAGGTC GCGCACACAG TGGTAACAAC GCTGTGCACT TCAGTGGTGG CGCAAGCCCA GCTATGATTG CTCGCGCTTT GCCTGCAGAT TTAGATACTT TATATGTGCG TGCTTGGGTG TATATGACTC GCCAATTGGG TATGAACCCC GGTGATAACC ATGAAACGCT CATCGCCTTG CGTGGCTCTG CTGGCAATGC AAACAACGAA GTGCGTTTTG GTGAAATTAA AGGGGTAATT GGTACTAACG AAGTACCGAG CGATAACATT GCACCTACTA TGGCAAGCTG GGGTGGTGGC CCTGCCTATG CATCAGATAC TTGGCATTGT ATCGAAGTGG CATTTTTATC GCAGCCAGCG TACGACACTG TAAATGCATG GGTTAACGAC GCGCTTGTAC ATACTATTGA TGAAGGCTCT GACTGGAACA ATGGTGCCTT AGAGGCGGAT TGGTTAAGTA ATAAATACGT AGAGCTAGCC TTCGGCTGGC ACAGCTTTAG CGGCAACGAT GTAGATGTAT GGATGGATGA TATCGTTGTA TCCACAACCC CAATCGGTTG CGACTAA
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Protein sequence | MSTQGKPCLK KLWPALALAA AVASPNAFSA CEYVVSNQWD SGYSATIKIH NDTNSTINGW NVNWQYSGDN RVTNLWNAAY VGSNPYSASN LSWNSTVGAG QTIEFGFQGA KNGGSAEVPV VTGDVCSGGG SSSGSSSSSS SSSSTGSSTS SSSSSSSSSS TGGSTSSSSS SSSTGGNGGA QQCNWYGEIR PLCNNQDSGW GWENQQSCIG RDTCSNQSGN GGIIGGSSSS SSSSSTGSSS SSSSSSSSSS SSSSSTSSSS SSSSSTSSSS SSSSSSSSSS STSSSSSSSS SSSSSSSSST SSSSSSSSSS SSSSSSSSSS SSSSSSSGGG VIFSADFESD SDSTQPAGWD NFIGWRQNGP NPNGSTFALV ESGRAHSGNN AVHFSGGASP AMIARALPAD LDTLYVRAWV YMTRQLGMNP GDNHETLIAL RGSAGNANNE VRFGEIKGVI GTNEVPSDNI APTMASWGGG PAYASDTWHC IEVAFLSQPA YDTVNAWVND ALVHTIDEGS DWNNGALEAD WLSNKYVELA FGWHSFSGND VDVWMDDIVV STTPIGCD
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