| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0425 |
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| Symbol | |
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| ID | 3967087 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 524008 |
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| End bp | 525129 |
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| Gene Length | 1122 bp |
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| Protein Length | 373 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637919488 |
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| Product | XerC/CodV family integrase/recombinase |
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| Protein accession | YP_525901 |
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| Protein GI | 90020074 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | [TIGR02249] integron integrase |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 0.607346 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGAGATG TACGTGGAAA TTTACCAGAT AACCCCATTC GTTTATTTGA TAAATTGCGA
GCGCACATGC GCGGTAGGCA GTTGGCATAT AAAACCGAGA AAACATATTG TTATTGGATA
GCGGACTTTA TTCGGTTTAA TAATATGGTC CACCCTGATG AGCTTACGCC AGAGCACGTG
GATGCATATT TAAGCAGCCT CGCCATCAAG CGTAACTGTT CTGTTAACTC CCAAAAAACT
GCGCTTAATG CCCTTTCTTA TTTATTTAAG CGTTATTTAA AACGCGAACT CGGCGATTTG
GCTTATACGC CTAGCAGCAA GCATAAAAAA CTCCCTACCG TATTTAGCCA TGATGAAGCC
ATGCGTGTAA TCAGCCACTT ACAGGGCGTG CATCAAGTTT TGGTTATGCT TATGTACGGT
AGTGGTTTAC GTGTAATGGA AGCCGTAAGG CTTCGGGTGC AAGATGTGGA TTTTGCAAAC
GAATGCTTGA TGATACGTGA GAGCAAAGGG TTGAAGTGGC GACGAACCTT GCTGCCAAAA
TCGTTGATTG AACCGCTAAC CATTTATAGA GACATAGCCC TAGCCCGACA TAAGGCAGAT
CTGGCCGATG GTTATGGCTC TGTCTATTTA CCTAACGCAT TGAACGTTAA ATACCCCAAC
GCCAGTAAAG AGCCAGCCTG GCAATATATG TTCCCAGCTC ATCATTTGTC GACGGACCCT
CGATCTGGCG TATTACGACG CCATCATATG GGCGAGCAAA GCGTGCAACG CGTGGTTAAA
ATCGCTCTGA AAGAAGCACG TATTTATAAA AAAGCTGGCT GCCATACCTT TCGACATAGT
TTTGCCACCA ATTTATTACG TGCCGGTACG GATATTCGCA ATATCCAAGA AATGCTAGGC
CACACGGATA TATCCACAAC ACAAATTTAC ACACACGTAG TAGGGGTACA AGAAAGAGGG
GTAACTAGCC CATTAGATAC AGCGAATACT GCATCTATTG ATAACCAGCA ATTAGTTCGT
AAGCTGAATG AACTAAATAA ACACGAGCAG GCTGATACAA CCCCTTCACC CATGCCACCA
ACTAAAGTGC GCGAACTAGC ACCGTTATAT GCGGTAGCTT AA
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| Protein sequence | MRDVRGNLPD NPIRLFDKLR AHMRGRQLAY KTEKTYCYWI ADFIRFNNMV HPDELTPEHV
DAYLSSLAIK RNCSVNSQKT ALNALSYLFK RYLKRELGDL AYTPSSKHKK LPTVFSHDEA
MRVISHLQGV HQVLVMLMYG SGLRVMEAVR LRVQDVDFAN ECLMIRESKG LKWRRTLLPK
SLIEPLTIYR DIALARHKAD LADGYGSVYL PNALNVKYPN ASKEPAWQYM FPAHHLSTDP
RSGVLRRHHM GEQSVQRVVK IALKEARIYK KAGCHTFRHS FATNLLRAGT DIRNIQEMLG
HTDISTTQIY THVVGVQERG VTSPLDTANT ASIDNQQLVR KLNELNKHEQ ADTTPSPMPP
TKVRELAPLY AVA
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