| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_2046 |
|---|
| Symbol | |
|---|
| ID | 3917693 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Novosphingobium aromaticivorans DSM 12444 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007794 |
|---|
| Strand | - |
|---|
| Start bp | 2184172 |
|---|
| End bp | 2185611 |
|---|
| Gene Length | 1440 bp |
|---|
| Protein Length | 479 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640444798 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_497319 |
|---|
| Protein GI | 87200062 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCCGCTGC GCCAGGCGCT GCGACAGGGT GTCCCGCTGA CCGAGGTGCG CGCCGAGCTT
GGCGATGCGC TTCTTCTGCA GGGCAACCGC CAGGAAGCGC GCAAGGTGCT TTACGGAGGC
GCCTTTCCAT CTGGCACCGA AGCGCGCGGA TGGCGCCTGA AAGGGCGTCT GGAGCTTGTC
GAGGGCAATC TCGGCGCTGC CGGATACGCC TTCGACCAGG CATTGCGATT GGCGCCTGAC
GAGTCGTCGT TGTGGATAGA CATTGCCCGT TTGCGCTTCA TGGGCGGCGA GGAGGCGCAA
GCGATCGAAG CCGCCGATCG CGCGGTGCGA CTGGCGCCGC GCGATCCCCG CAGCCTCGAA
TTGCGCGGGT TGCTGGTGCG CGAACAGTTT GGCCTGCGTG CAGCGCTGCC ATGGTTCGAG
GCGGGGCTGG CGGCGGCCCC TGACGACACC GGCCTGCTGG GCGAATATGC CGCCACGCTT
GGCGACCTTG GCCAGTATCG CGCGATGCTG GTCGTGTGCC GCAAGCTGGC AAAGGTAGAT
CCGGGCAACC TGCGCGCGCT CTACCTTCAG GCCGTACTGG CAGCGCGGGC AGGGCGCATC
GATCTTGCCC GCAAGATCAT GCAGCAGACC GGCACGGCGT TTCGCGATGT CCCGGCTGCG
ATGCTGCTCA ACGGATTGCT CGAGTATCAG GCCGGGAACG CCAATCTCGC GGTCGGGTAC
TTCGACCGCC TGGTGCGGGC GCAGCCCGAC AACCTCCAGG CGCGGACACT GCTGGCAAGG
GCGCTGGAAC GCGAAGGATT GAATCAGCAG GCCCTCGATG TCGCAGGCCA GTGGGCGCAA
TCCGCATCCG CGTCGCGCTA TCTTCTTATG GTCACGGCGG ATGCGCTGTC CGGGCTCAGG
CGAAAGCGCG AAGGCGAACA ATTGCGAGGG CGCGCTGCGC GAGCGGAGCC AGTGCCTGCG
ACGGTCATCC CGACAGGACA GCCCCTTGGC GCCCTGGCCA TTGGCTATGG ACAGTCGCCG
AACCTTGCCG CCACCGCCGT GCCCTACATT CGCGGGTTGA TCGAGGCGGG AAGTGCGGGC
GAAGCGGTTG CCGTTGCAGA CCGGCTGCGT CAGGCCAGCC CCGGCGCGGC GGGAGCCTGG
CTTCTTGCCG GCGATGCGCG CCTCATGTCC GGGGATTTCG CCGAGGCGCA GGAAATGTAT
GGGCGCGCTG CCGTCATTCG TTTCAACCTT CCGACGCTTC AGCGCATCGA CCTGGTTCTG
AGGCGTCAGG GCAAGGCTGC CGAGGCCAAT GCACTCGTCG CGCGCTATCT CTGGCAGAAT
CCCGGCAGTC CGCAGGCGAT GAAGCTGCTT TCGGCGGGGC GCGCCGAACT GGGCGATGCG
GCGGGCGCCG CCATGATCGA GGCGGTGCTG CGCGCCAGGG GCCTGCGCAA TCCGTCATGA
|
|---|
| Protein sequence | MPLRQALRQG VPLTEVRAEL GDALLLQGNR QEARKVLYGG AFPSGTEARG WRLKGRLELV
EGNLGAAGYA FDQALRLAPD ESSLWIDIAR LRFMGGEEAQ AIEAADRAVR LAPRDPRSLE
LRGLLVREQF GLRAALPWFE AGLAAAPDDT GLLGEYAATL GDLGQYRAML VVCRKLAKVD
PGNLRALYLQ AVLAARAGRI DLARKIMQQT GTAFRDVPAA MLLNGLLEYQ AGNANLAVGY
FDRLVRAQPD NLQARTLLAR ALEREGLNQQ ALDVAGQWAQ SASASRYLLM VTADALSGLR
RKREGEQLRG RAARAEPVPA TVIPTGQPLG ALAIGYGQSP NLAATAVPYI RGLIEAGSAG
EAVAVADRLR QASPGAAGAW LLAGDARLMS GDFAEAQEMY GRAAVIRFNL PTLQRIDLVL
RRQGKAAEAN ALVARYLWQN PGSPQAMKLL SAGRAELGDA AGAAMIEAVL RARGLRNPS
|
|---|
| |