| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_1543 |
|---|
| Symbol | |
|---|
| ID | 3917218 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Novosphingobium aromaticivorans DSM 12444 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007794 |
|---|
| Strand | + |
|---|
| Start bp | 1593855 |
|---|
| End bp | 1595447 |
|---|
| Gene Length | 1593 bp |
|---|
| Protein Length | 530 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640444284 |
|---|
| Product | glucose-methanol-choline oxidoreductase |
|---|
| Protein accession | YP_496818 |
|---|
| Protein GI | 87199561 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCGCAAGC ATGAGGCATT CGACTATGTC ATCGTTGGTG CCGGTTCGGC CGGTTGCGTC
CTCGCAAACC GGCTATCGGC CGATCCCGAC GTGAGTGTCC TGGTACTCGA GGCGGGCGGG
CGCGACACCA GTCCGTTCAT CCACATGCCG GCGGGCTTCT TCCAGTTGTT GCAGAGTGGC
AGCAATGCCT GGCACTACCA GACGGCGCCG CAGGAGCACC TGAACGGCCG CGTACTTGCC
GACGCCCGAG GCAAGGTGCT GGGCGGCAGC AGTTCCATCA ACGGCATGTG CTACAGCCGC
GGCAGTCCCG AGATATTCGA CCACTGGGCG GAACTCGGCA ACGATGGCTG GTCATACAAA
GACGTGCTGC CCTGGTTCCG CAAGGCCGAG GGCAACCCGG GCGCCGATCC TTACTTCCAC
GGCCAGGATG GTCCCTTGTC CGTTACCCAT GCTTCGGTCA CCAACCCGGC GCAGTTGGCC
TGGCTTCGGG CTGCGCAGGA AGCAGGCTTT CCCTACAGCG ACGACCACAA CGGTGCCGCC
CCGGAGGGCT TCGGGCCGGG GGAACACACA ATCCGCAACG GGCGGAGGAT CAGCACGGCT
GTCGCGTATC TCAAACCGGC GATGCGACGT CGCAACCTCG TTGTACGAAC TCGCGCGCAT
GCCACGCGGG TCTTGCTCGA GGGCGCGCGC GCAACAGGAG TGGAATATCG GCAGGGAAGG
GCGCTGCAGA AGGTCCACGC CAGTCGCGAA GTGATCCTTT GTGGTGGCAC TTTCCAGTCG
CCGCAATTGT TGATGCTGTC GGGCATCGGA GACGGCGCAC ATCTTCAGCC GCTCGGTATA
CGTACGGTGG TCGACCTGAA AGGCGTGGGC CGCAACCTCC ACGATCACAT TGGCACGCAA
GTCCAGATGA CCTGCCCAGA GCCCGTGTCC GACTTCTCGG TAGCGACGAA CCCGTTGCGG
ATGGCGCTGG CGGGCCTTCA GTATCTCGTC GCGCGCAAGG GGCCTCTGGC CCGGAGCGGA
ACCGACGTCG TTGCCTATCT GCGCTCGGGC GCGCCCGGGC ACGATGAACT CGATCTCAAG
TTCTATTTCA TCCCGCTGCT GTTCAACGAG GGTGGCGGCA TTGCACGGCA GCATGGCTTC
TCCAACCTGG TTATCCTGAC CCGGCCCGAA AGTCGCGGGG AGCTGCGCCT CCGCTCTGCC
AACCCGGTGG ATCAGCCGCT GATCGATTCG AATTACCTGG CGGAAGGGCG CGACCGCGAT
GCGCTGCGCC GCGGGGTTGG CATTGTTCGC CGGATCTTTG CCCAGCCTGC GTTTGCCCGC
TTTCGCGGCG TCGAATGCAC GCCGGGCGCC GACATTGCCG ATGACGTTGC GCTCGATGGC
TTCTTCCGCG AGACCTGCAA CGTCAATTAC GAGGCCGTGG GCACCTGTCG GATGGGTGAT
GACGAACTCG CCGTGGTCGA TCCGGGGTTG CGAGTTCGGG GTGTGGAAGG TCTTCGCGTC
GTTGACGGGT CGGTAATGCC CCGCATCACG ACCGGGGACC CCAATGCGAC GATCGTGATG
ATCGCGGAAA AGGCCGCACA GATGATCCTC TGA
|
|---|
| Protein sequence | MRKHEAFDYV IVGAGSAGCV LANRLSADPD VSVLVLEAGG RDTSPFIHMP AGFFQLLQSG
SNAWHYQTAP QEHLNGRVLA DARGKVLGGS SSINGMCYSR GSPEIFDHWA ELGNDGWSYK
DVLPWFRKAE GNPGADPYFH GQDGPLSVTH ASVTNPAQLA WLRAAQEAGF PYSDDHNGAA
PEGFGPGEHT IRNGRRISTA VAYLKPAMRR RNLVVRTRAH ATRVLLEGAR ATGVEYRQGR
ALQKVHASRE VILCGGTFQS PQLLMLSGIG DGAHLQPLGI RTVVDLKGVG RNLHDHIGTQ
VQMTCPEPVS DFSVATNPLR MALAGLQYLV ARKGPLARSG TDVVAYLRSG APGHDELDLK
FYFIPLLFNE GGGIARQHGF SNLVILTRPE SRGELRLRSA NPVDQPLIDS NYLAEGRDRD
ALRRGVGIVR RIFAQPAFAR FRGVECTPGA DIADDVALDG FFRETCNVNY EAVGTCRMGD
DELAVVDPGL RVRGVEGLRV VDGSVMPRIT TGDPNATIVM IAEKAAQMIL
|
|---|
| |