| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3239 |
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| Symbol | |
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| ID | 4605486 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 3832379 |
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| End bp | 3833395 |
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| Gene Length | 1017 bp |
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| Protein Length | 338 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 639782655 |
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| Product | outer membrane porin, putative |
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| Protein accession | YP_929111 |
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| Protein GI | 119776371 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3203] Outer membrane protein (porin) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.922918 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTACAAAG CACTTATTGC ACTGGCACTG CTTGCTCCCG GCAGCGCTGT ACTGGCCGCC
GATGCGGATT TTTATGGCCG TATCAACCTG TCGGTGACCG ACTCTGACCT GGGCGTAGCC
GCCCAAAATG GCAAGGCCGG TACCGTACTG GAAAACAACT CCTCCCGTAT TGGGGTAAAA
GGCAGCGAAG CCATAGGCGA AGGGCTGGAG GTGTTTTACA AGCTGGAGTT TGGAGTGGAT
AACTTCGATA ACTCAGGCAA AACCTTCAAA CCCCGTAACA CCTACATTGG GGTGAAAACC
GATTTCGGTG CCGTGAGCTT CGGTCGCAAC GACAGCGTCT TCAAAACAGC TGAAGGCACT
GTTGACGCCT TCAACGGTCT CAACTCAGAT ATAAACCAGT TGTTGCCAGG GCAAGACCGT
TTCGGGGACA GCGTGACCTT CAACTCCCCT AAACTCGGAA AGCTGGTCAC CCTGAACGGT
ACGTACCTCG TCAGTGACAA TTATGACAGC AGCAATGCAG CCTATGCCAT TTCCGCCACC
CTTGGCGACG CCAAACTGAA GAAACAGGAC TGGTATCTGG CGTTCGCCTA CAACGATGGT
CTGAAGAGCA TTGAATCCAG TCGTGTTGTA GGGCAAATCA AGCTGGGCGA TTTGATGCTG
GGCGGCCTGT ACCAGCAGAG TGAGCACCAG AGCAAGTCCA ACCTGGACGG CAACAGTTAT
TACGCCAACG TGACCTATAG CATTGGCAAG ACCGACCTCA AGCTGGTCTA CGGCCACGAT
GATGCGGGAC TTGGAAAGTA CGTATCAAAC TTCATCAAGT CTCAAACCAG TGGCAGCACG
TCTCAAGTGG CGGATGTCGA TTTGAACCAG CTGAGTGTGG GTGTTAACCA TAAACTGGCC
AAGAGCACTC AAATCTATGG TCATTACACC CGCTACGATG GTGATCTGTT GCTCGATGGT
GTGAATGTCT CCCTCGATGA CGACCTTATC ACCCTGGGGA TTCGCTACGA CTTTTAA
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| Protein sequence | MYKALIALAL LAPGSAVLAA DADFYGRINL SVTDSDLGVA AQNGKAGTVL ENNSSRIGVK
GSEAIGEGLE VFYKLEFGVD NFDNSGKTFK PRNTYIGVKT DFGAVSFGRN DSVFKTAEGT
VDAFNGLNSD INQLLPGQDR FGDSVTFNSP KLGKLVTLNG TYLVSDNYDS SNAAYAISAT
LGDAKLKKQD WYLAFAYNDG LKSIESSRVV GQIKLGDLML GGLYQQSEHQ SKSNLDGNSY
YANVTYSIGK TDLKLVYGHD DAGLGKYVSN FIKSQTSGST SQVADVDLNQ LSVGVNHKLA
KSTQIYGHYT RYDGDLLLDG VNVSLDDDLI TLGIRYDF
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