| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2904 |
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| Symbol | |
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| ID | 4605151 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 3451314 |
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| End bp | 3452255 |
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| Gene Length | 942 bp |
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| Protein Length | 313 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 639782315 |
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| Product | formate-dependent nitrite reductase, nrfD protein |
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| Protein accession | YP_928776 |
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| Protein GI | 119776036 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3301] Formate-dependent nitrite reductase, membrane component |
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| TIGRFAM ID | [TIGR03148] cytochrome c nitrite reductase, NrfD subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.554109 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGCTT TTCATTTCGA AGGCCTGGTA TGGCATTGGC CTATCGCCAT TTACCTCTTC
CTGGCGGGTC TGTCTGCTGG GGCGGTATTT TTCGCCATCA TGCTGAAACA CTTTAAGTTA
TTCCATGAAG CCTGGCATTC GCCCTTCGTG CAGGCGGCGG CCATCATCGC ACCTGTCGCC
GTATTTGGTG GTCTGGGGAT CCTGGTATTT GACCTCACCC GGCCACTGGA TTTCTGGAAG
ATCCTGGTGT TCTACAATAC CAGCTCTGTG ATGTCCATGG GGGTGCTGGT GCTGATGGCC
TATCAGGTGG TGCTGTTTGC CTGGATAGCA TGCGTCTTCC ATGTGCGCAT CGGCCAGTTG
CTGGGCAATC GCTTGGCCAT CGTCCGGCAG CTGCTCAATT GGCTGGTTCT GCAGGAAGCT
GCTATCACCG GCATTCTGGT GATCCTCGCC ATCTCCCTTG GGGCCTACAC CGGCTTCCTG
CTGTCGGCGC TGATAGGCTT CCCGCTGCTC AATAACCCGG TGCTGCCATT GCTGTTCCTG
ATCTCCGGGC TCTCCTCCGG CGCCGCCGCA ACCCTGCTGG GTGGTGTGCT GCTTCGGGGC
AACCCCAATG GGGTGGAAGT GCGTTTTATC CACGGCATCG AAATTCCCCT CATCCTGGTG
GAAATTGGCC TGCTGTTTAC CTTCTTCGCC GGATTAATCC TCTCCGGCGG TCAGAGCCAG
GTTGCGGCGC TCAACGCACT GGGGTTTGGC TTCTGGGGGT GGATATTCTG GGCCGGCGTT
ATCGGCCTAG GTCTTACCCT GCCACTGGCC TTCAATCTGT GGATGAAAGT CTCGGCGGAT
CGTAAGTTCG CCTATGTGGC GGTAACCGCC AGTTTCAGCC TTTTGGGGGT GTTCTTGCTG
CGCAACTTTA TCCTCTATAC CGGCCAAATG ACGGGGACCT AG
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| Protein sequence | MSAFHFEGLV WHWPIAIYLF LAGLSAGAVF FAIMLKHFKL FHEAWHSPFV QAAAIIAPVA
VFGGLGILVF DLTRPLDFWK ILVFYNTSSV MSMGVLVLMA YQVVLFAWIA CVFHVRIGQL
LGNRLAIVRQ LLNWLVLQEA AITGILVILA ISLGAYTGFL LSALIGFPLL NNPVLPLLFL
ISGLSSGAAA TLLGGVLLRG NPNGVEVRFI HGIEIPLILV EIGLLFTFFA GLILSGGQSQ
VAALNALGFG FWGWIFWAGV IGLGLTLPLA FNLWMKVSAD RKFAYVAVTA SFSLLGVFLL
RNFILYTGQM TGT
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