Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_2404 |
Symbol | |
ID | 4604653 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 2887909 |
End bp | 2889132 |
Gene Length | 1224 bp |
Protein Length | 407 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 639781801 |
Product | DEAD-box ATP dependent DNA helicase |
Protein accession | YP_928278 |
Protein GI | 119775538 |
COG category | [J] Translation, ribosomal structure and biogenesis [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG0513] Superfamily II DNA and RNA helicases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.785328 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTCTTTTG CTGCTTTTAC TCTGCCGTCT CCCTTGGCTA ACAATCTCGC TAAACTGGGC TTTGTCGAGC CCACCGAGGT ACAGGCCGGT GCCATCCCCA TGATGTTGGC CGGGGATGAC CTGATGGTGA AAGCGGCTAC CGGGACGGGT AAAACCGCCG CTTTTTTGCT GCCGATACTT GCCCGGCTGC TTGCTGACGA GGTGGCAAGC CGCAACCTGC CTGCGCCCAG AGCCCTGGTA CTGGTGCCCA CCAGGGAGCT GTGCCAACAG GTTTATGATG CCGCCAAAGC GCTGGCGAAA GGCAGCGCCG TGCGTATTGC CCAGGTTTAT GGTGGTGTGC CCCTGGAAAG CCAGCTCAAT GCCATCAAGG GCGGCGTGGA CTTGATGGTT GCAACGCCGG GGCGTTTGCT CGACCACCTG AAAAAACGCA CCCTCAGAAT CGATACCGTC AGTCAGTTGG TGTTTGACGA GGCCGACCGT ATGCTCGATA TGGGCTTTGA GGATGAGATC CGCGCGCTGG TGAAAAAGCT CGCCAAAACC CGGCAAACTG CGCTGTTCTC AGCCACCTTG GGGGACAATG TCTGGCAGTT GGCCAAGAGC CTGATGGATT CGCCCAAGCT GCTGGAAATC GCCGCGGCGA AAGATGCCAA GCCACTGATT GAAGAGCAGG TTTATCAGCT CGACAGCGAG CGCAAGTTCG AATTTATCTG CCACTTGCTG GGTAAAAACA GCTGGTCTCA GGTGCTTATT TTCAGCCGTA CCAAAGAAGG GGCCGATAAG CTTACGGCCA AACTGGTAGA GGCTGGTCAC AGCGCCGTTG CCATGCACGC CGACCTGAGC CAGCGTCAGC GGGAGCAAAA CCTTGCCGAC TTCAAGGCGG CCGATGCGCG GGTATTGGTG GCAACTGACG TGGCCGCTCG GGGGTTGGAT ATACAGGCGC TGCCCTGCAT CATCAATGTC GAACTGCCCT TTAAAAAAGA AGATTACGTA CATCGCATCG GGCGCACTGG CCGGGCTGGC AGCGCCGGGC TTGCCATCAG TTTGCTGGAT GTTGCCGACG AGCCTTTGCT GGTGGCGCTT GAGCACTACC TCGACCGGCG CTTGCCTCAG CAGTGGTATC CGGGCTTTGA ACCGGATTTG TCCATCCGTC ATGAGCGTCC CCACAGCCTC AGTAAAGCGG CACAAAAACA AAAAGCCCGG AAGCGGGCTT TGGCGAAGCG CTGA
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Protein sequence | MSFAAFTLPS PLANNLAKLG FVEPTEVQAG AIPMMLAGDD LMVKAATGTG KTAAFLLPIL ARLLADEVAS RNLPAPRALV LVPTRELCQQ VYDAAKALAK GSAVRIAQVY GGVPLESQLN AIKGGVDLMV ATPGRLLDHL KKRTLRIDTV SQLVFDEADR MLDMGFEDEI RALVKKLAKT RQTALFSATL GDNVWQLAKS LMDSPKLLEI AAAKDAKPLI EEQVYQLDSE RKFEFICHLL GKNSWSQVLI FSRTKEGADK LTAKLVEAGH SAVAMHADLS QRQREQNLAD FKAADARVLV ATDVAARGLD IQALPCIINV ELPFKKEDYV HRIGRTGRAG SAGLAISLLD VADEPLLVAL EHYLDRRLPQ QWYPGFEPDL SIRHERPHSL SKAAQKQKAR KRALAKR
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