| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2353 |
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| Symbol | |
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| ID | 4604603 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 2826457 |
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| End bp | 2827323 |
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| Gene Length | 867 bp |
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| Protein Length | 288 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 639781751 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_928228 |
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| Protein GI | 119775488 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.803943 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCATTTTC ATAAGCAATC CGGACACTTA TACATTCAAT ATCTTACTCT GATCCTCGGA
CTCCTTTATG CAGCCTTGTA TCTTAAGTGG ACAGAGCATC AGCCTCAGCT AAAGCACCTT
GAATTACTCC TCGAGAGTGT GCCTGTGCTC TTCTGGTTGG TGATTATGTT CAGCTGCCAC
TACATACGCC ACCTCACCTA CAGCTATGTC CTGCTCCTTA GCGGTGCAAT CATCTCCTTC
TTTGCCAGCC TGATGGACTG GTTGGATGAA ATCACAGTGC CAACAGAATT TGCCTTTGTA
GAAGACGTAT TGCAGTCAAT CGGGCTTCTC CTCTCAGCCA CCGGCTTATT GCTGCTCTTT
CATCATCAGT TAGTGCAGCA AAGTTTGCTT AAAAAAATTG CCGCCACCGA TCCCCTTACC
GGCGCCCTGA ACCGCCGCGC CTTCAAAGCA CCCAAAACGC ACAGCGGCAG CACCGTGTTT
GCTCTTGTGG ATGTGGACCA CTTCAAGCGC ATCAATGATA CCTATGGCCA CGATGCCGGT
GACTTTGTGC TGGTTGAGCT TGCCAAACTT ATCAGCAACC ATATACGTGA AGATGACCAG
TTTTTCCGTT GGGGAGGCGA GGAGTTTTTA CTGGAGTTCA GGCAAGCCGA GTTGGCACAG
GCAAGCAAAA GAATGGAAGC CTTGCGCCAA CTGGTTGAGT CCAGCCATTT CAATCTCAAT
GGTCAGGCCA TCAATATCAC CATCAGTGCG GGGCTTACCT GTGTATCACC CAATCATGGA
GGCCTCGAAA AGGCGCTTAA GGCCGCAGAT GAAGCGCTTT ACCGTGCAAA AGACAGCGGC
CGTAACCGAA TTGAAGTGGC AGTATAA
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| Protein sequence | MHFHKQSGHL YIQYLTLILG LLYAALYLKW TEHQPQLKHL ELLLESVPVL FWLVIMFSCH
YIRHLTYSYV LLLSGAIISF FASLMDWLDE ITVPTEFAFV EDVLQSIGLL LSATGLLLLF
HHQLVQQSLL KKIAATDPLT GALNRRAFKA PKTHSGSTVF ALVDVDHFKR INDTYGHDAG
DFVLVELAKL ISNHIREDDQ FFRWGGEEFL LEFRQAELAQ ASKRMEALRQ LVESSHFNLN
GQAINITISA GLTCVSPNHG GLEKALKAAD EALYRAKDSG RNRIEVAV
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