Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_1741 |
Symbol | |
ID | 4603991 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 2130596 |
End bp | 2131414 |
Gene Length | 819 bp |
Protein Length | 272 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 639781104 |
Product | short chain dehydrogenase |
Protein accession | YP_927616 |
Protein GI | 119774876 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.00532384 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.00268823 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTTCGACT TTAACGGGAA AAACATTTTG GTGGTCGGCG GTACCAGTGG CATCAACCTG GGCATCGCGC GAGCCTTTGC GAAGGCGGGC GGCCGGGTAG CGGTAGCGAG TCGCAGTCAG GACAAAGTCG ATGCGGCGCT TACTCTCTTG AGTGGAGACA ATCCTAAGGT AACGCCGCTG GGCGCCAGTT TCGACGTGCG TGATAATGAC GCTGTGCTCT TCGGTATCGC CGCATTGCAT CATCAGCTAG GCACCATAGA TGTACTTATC AGCGGCGCTG CCGGTAATTT CCCGGCTCCT GCTGCCGGAA TGAGTGCCAA TGGTTTCAAG TCGGTTGTGG ACATTGACCT CCTTGGCAGT TTTCAGGTGC TGAAAGCCTG TTACCCTTTG TTGTCACGCC CAGGTGTCAT TCTGCAGATT TCAGCTCCTC AGGCCTTTGT CCCCATGCCA ATGCAGGCCC ATGTGTGCGC TGCCAAGGCT GGTGTTGATA TGCTCACCCG AACACTTGCG ATGGAATGGT CCCACGAAGG GATTCGGATT AACTCGATAG TTCCTGGTCC AATTGAAGGC ACAGAAGGGT TTGACAGACT TGCTCCCGGC GATGCCCTCA AGGCACGGGT TGCGCAAAGT GTGCCCCTTG GACGAAACGG CAGTATCACA GATATCGCAA ACTGCGCACT GTTTCTGGCT TCTGAGTTCG CCAGTTACAT CAATGGCGTG GTTTTACCCG TGGATGGCGG CTGGTCACTT GGTGGAGCCA GCATGGCCAT GACAGAGCTT GGGCAACTCA TATCAAAGTC GGGCAAGGGC TCAGCTTAA
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Protein sequence | MFDFNGKNIL VVGGTSGINL GIARAFAKAG GRVAVASRSQ DKVDAALTLL SGDNPKVTPL GASFDVRDND AVLFGIAALH HQLGTIDVLI SGAAGNFPAP AAGMSANGFK SVVDIDLLGS FQVLKACYPL LSRPGVILQI SAPQAFVPMP MQAHVCAAKA GVDMLTRTLA MEWSHEGIRI NSIVPGPIEG TEGFDRLAPG DALKARVAQS VPLGRNGSIT DIANCALFLA SEFASYINGV VLPVDGGWSL GGASMAMTEL GQLISKSGKG SA
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