| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1392 |
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| Symbol | |
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| ID | 4603644 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1682761 |
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| End bp | 1684686 |
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| Gene Length | 1926 bp |
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| Protein Length | 641 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 639780742 |
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| Product | putative TrkA family protein |
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| Protein accession | YP_927269 |
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| Protein GI | 119774529 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0475] Kef-type K+ transport systems, membrane components
[COG0569] K+ transport systems, NAD-binding component |
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| TIGRFAM ID | [TIGR00932] transporter, monovalent cation:proton antiporter-2 (CPA2) family |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.0135238 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGGGA TTTTTCTGCA GGCCTTTGTT TACCTGCTTG CGGCTGTGCT TGCGGTGCCC
CTTGCCAAAC GTTTGGGGCT GGGCTCTGTG CTCGGTTACC TGGTTGCCGG TGTGGCCATT
GGGCCTTTGT TGGGGCTGGT TGGTCAGGAA ACTCAAAGTA TTCAGCATTT TGCCGAATTC
GGTGTGGTGC TGATGCTGTT TCTGGTGGGG TTGGAGCTCG ACGCCAAACA GCTGTGGCAG
ATGCGCCAGC GGCTCCTGGG CCTGGGTGGT TTGCAGGTGC TGCTGACCAC GGGCGCAGTG
GCGGGCCTGG CGCTGATTTT GAACCAGCCG TGGCAGATAG CGCTGGCCCT TGGAATGATC
TTTGCCATGT CCTCCACCGC CATCGTGCTG CAATCCTTCA ACGAGAAGGG ACTGGCTAAA
ACTGAAGGTG GTCGCGGTGG TTTTTCGGTG CTCCTGTTTC AGGACATTGC GGTTATTCCG
ATTCTGGCGA TATTGCCGCT GTTGGCCCTC AGCGCCCCGC AGCTCGATGC CGGCCATGAG
GATATGTCGC TGGTGGCTGG TTTGCCCGCT TGGGCAAATG CGCTGGTGGT GCTTGGCGCC
ATCGCTGCCG TGGTGTTTGG CGGTCGCTTT TTAACAAGGC CACTCTTTGG ATACGTGGCG
CGTTCAGGGC TCAGGGAAGT CTTCACTGCG GCGGCGCTGA TGATGGTGAT TGGTATTGCC
GCGCTCATGA GTCTGGTGGG ACTGTCGCCT GCGCTGGGAA CCTTTCTGGC GGGAGTGGTA
CTCGCCAGCA GTGAGTTTCG CCATGAACTC GAGTCCACCA TCGAGCCCTT CAAGGGGCTG
TTGTTGGGGC TCTTTTTTAT CACTGTGGGC GCGGGTATCG ATTTTGAGAT GCTGCTGTCG
CAGTTTGCGC TGGTGCTGGG GCTGGCATTG GGCGTGATGG TGATAAAGGC GCTGGTGCTC
CTGCTGCTGG CAAAGATTTT CCGTCTATCC GGCTCTGACA AGTGGCTGTT TGCGCTGTCG
CTGGCACAGG CCGGGGAATT TGGCTTTGTG CTGCTGGGCT ACAGTCAGCA ACAGGGTATC
TTTGGCAGCG AGCTTGGCGG GCTTCTTTCC ATGGTGGTGG CCCTCAGTAT GTTTTTAACC
CCGGGGCTCT TTATCCTGTA TGAACGGATT ATCCTGCCGA GAGTGACCCG CAGTACCAAT
GAACGTGAAG CCGATACCAT AGATGAGCAG GGGCCGGTGA TCATTGCGGG CATAGGCCGC
TTTGGGCAGA TAGTTAACCG CCTTTTGCGG GCCAACGGGG TGAAAACCGT GGTACTCGAC
CGCGAATATG CCCAGGTGGA ACGACTGCGT GAAATCGAGA TGAAGAGCTT TTTCGGGGAT
GTGAGTAACC CGGAGCTTTT ACATACCGCG GGTATTGAGT CGGCCAAGAT GCTGGTGGTG
GCCATCGATG ATGTGGAAGG GGCCACAGCG CTTGTGCGCC ACGTTCGCCA ACAATATCCG
CAGGTGGCTA TTCTGGCCCG GGCCTTTGAC AGAGGGCACT TTTATGCGCT GACCGAAGCC
GGTGCCGACT GGGTGGTGAG CGAGAGCTTC TACTCGGCGC TTAACATGGG AGGCGAGGCG
CTGATACGCC TTGGTATGCA TCCCTTTGCC GCCGAGCAGC GCAAAACGGC TATGGTGGAG
CGGGAAAAAG CCCATGCAAG CGAGCTCTAT GACGCCTGGC TTGAGGTGCG GGATAATATC
GACCGCCGCG AGCGCTATTT GAAGTTATTC ATCAAGTTGG AGGAGGCGCT CAAGGAGGAT
ATGGGTAAGG ACAGGATGGA TGGCCATAGC CGCAGCTTGA GTGGCTGGAC ACCGCCGCCC
AAGGGGTATG ACAAGGCGTT GGCTGAGCAG GAGGAGAGCA TGCGCCCTCA AGGTGCAAAG
GATTGA
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| Protein sequence | MTGIFLQAFV YLLAAVLAVP LAKRLGLGSV LGYLVAGVAI GPLLGLVGQE TQSIQHFAEF
GVVLMLFLVG LELDAKQLWQ MRQRLLGLGG LQVLLTTGAV AGLALILNQP WQIALALGMI
FAMSSTAIVL QSFNEKGLAK TEGGRGGFSV LLFQDIAVIP ILAILPLLAL SAPQLDAGHE
DMSLVAGLPA WANALVVLGA IAAVVFGGRF LTRPLFGYVA RSGLREVFTA AALMMVIGIA
ALMSLVGLSP ALGTFLAGVV LASSEFRHEL ESTIEPFKGL LLGLFFITVG AGIDFEMLLS
QFALVLGLAL GVMVIKALVL LLLAKIFRLS GSDKWLFALS LAQAGEFGFV LLGYSQQQGI
FGSELGGLLS MVVALSMFLT PGLFILYERI ILPRVTRSTN EREADTIDEQ GPVIIAGIGR
FGQIVNRLLR ANGVKTVVLD REYAQVERLR EIEMKSFFGD VSNPELLHTA GIESAKMLVV
AIDDVEGATA LVRHVRQQYP QVAILARAFD RGHFYALTEA GADWVVSESF YSALNMGGEA
LIRLGMHPFA AEQRKTAMVE REKAHASELY DAWLEVRDNI DRRERYLKLF IKLEEALKED
MGKDRMDGHS RSLSGWTPPP KGYDKALAEQ EESMRPQGAK D
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