Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_0499 |
Symbol | |
ID | 4602754 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 613827 |
End bp | 614441 |
Gene Length | 615 bp |
Protein Length | 204 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 639779835 |
Product | HAD superfamily hydrolase |
Protein accession | YP_926379 |
Protein GI | 119773639 |
COG category | [R] General function prediction only |
COG ID | [COG0546] Predicted phosphatases |
TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED [TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
|
Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAGTCGTC GGGCCGAATA TCCAGAATGG CTTGCGGACA TTCGCGCCGT TGTTTTCGAC CTCGATGGCA CCCTGGCACA TTCCAATCCT GACTTTCCGG CTATCCGGCA GGCACTCGGT CTTAGTGCCG GGGAGGATAT TCTGGCCCAT ATAGCAGGTT TGCCAGCGGC GAAGCAGGCC GGCGCCATGG CGACAGTGCA TCATTATGAA ATGGCGGCCT CTCACCGGGC TGAATGGATA GGGGGCGCAG CAGAACTGCT GCAGTTTGTG CAGCAAAAAA CGCTGCCAAC GGCGATATTG ACCCGCAATA TGCGCCAGGC GGCTGAGTTG ACACTGTCGC GTCTGGGATT ATCGGTTGAA GTATTACTGA CCCGGGAAGA TGCCCCGGCT AAGCCAGACC CTGCCGGCCT CATCCACATC ATGGACATCT GGCGGCTTGA GCCAACTCAG GTACTCTATG TGGGTGACTA TCTCTTTGAC TTACAGACGG CACGGGGCGC CGGTTGCCGC TCTGCGCTCT ATTGCCCTGA TGGCAAGCCG GACTACGGCG ACATGGCTGA CTTGCTGGTA CCCTGTTATT TTGAACTCAT TGATTTGTGG CGCGGCGCTG AATAA
|
Protein sequence | MSRRAEYPEW LADIRAVVFD LDGTLAHSNP DFPAIRQALG LSAGEDILAH IAGLPAAKQA GAMATVHHYE MAASHRAEWI GGAAELLQFV QQKTLPTAIL TRNMRQAAEL TLSRLGLSVE VLLTREDAPA KPDPAGLIHI MDIWRLEPTQ VLYVGDYLFD LQTARGAGCR SALYCPDGKP DYGDMADLLV PCYFELIDLW RGAE
|
| |