Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sala_3135 |
Symbol | |
ID | 4082391 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingopyxis alaskensis RB2256 |
Kingdom | Bacteria |
Replicon accession | NC_008048 |
Strand | - |
Start bp | 3286985 |
End bp | 3288142 |
Gene Length | 1158 bp |
Protein Length | 385 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 638011520 |
Product | lycopene cyclase |
Protein accession | YP_618171 |
Protein GI | 103488610 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR01789] lycopene cyclase [TIGR01790] lycopene cyclase family protein |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTGGGGC CGAACATCGA TAAATGCGAC ATCGCGATCG TCGGCGGCGG GCTTGCGGGC GGACTTGCGG CGCTGGCGCT GGCGGCCAAG CGGCCCGATC TCGACATACG ACTGATCGAG CCGGGGCCGG TCGGGGGCAA TCATATCTGG TCCTTTTTCG ACAGCGACAT CGCAAAGAAG GACCGCTGGC TCGTCGCGCC GCTCGTCCGC CACCACTGGC CGCGCTATGA CGTGCGCTTT CCCGCGCACG CGCGGACGCT GCACATGGGA TATAAAAGCA TCACCGGCGA AGCGCTGGCC GAAGCGGTGG CGGCGGCGCT GCCGGACGGC CATATCATCG CCGATCGCGC GAAACATGTC GCGCCCGACC ATCTGCTGCT GGCGCGCGGC GGGCGATTGT CGGCGAAGCA TGTCCTCGAC GCGCGCGGCG CGGGCAAGTT TCCGACACTG GACTGCGGCT GGCAGAAGTT TGTCGGGCAG GCGCTCACCG TGAAGGGCGG GCACGGCGTC GAACAGCCGG TGGTGATGGA CGCGACGGTG GAGCAATTGG ACGGCTATCG CTTTGTCTAT CTCCTCCCCT TCGACGCCGA AACCCTGTTC GTCGAGGACA CCTATTACAG CGACGACGCC GACCTCGACG AAATGGTGGT GCGCGAACGC ATTGCCGCCT ATGCCGCGGC GCAGGGCTGG CAGGTGACGG CGACGATGCG CGAGGAGAGC GGCGTGTTAC CAGTGGTGAT CGCGGGCGAT TTCGACCGGT TGTGGCCGGA ATCGGACCGC ACGTCACGAA TCGGCGTGCG CGCAGGGATG TTCCACGCGA CGACGGGTTA TTCGCTGCCG CACGCCGTAC GCACCGCGGC GGCGCTGCCC GCGCTGGTCG GTCGCGCCGA CCTGCCCGCG CTGCTGCGCG CGCGCGCGCA GTCGGCGTGG CGGCGCCAGC GCTTTTACCG GATGCTGGAC GCCATGCTGT TCCGCGCCGC CGATCCCGAT AGGCGTTACC GCATTTTCGA GCGATTCTAT CGCCTGTCGC CGCGGCTCGT CGCGCGCTTC TATGCCGGGC GGTCGACCGC GGCGGACCGG CTGCGCCTGC TTGCGGGAAA GCCGCCGGTG CCGGTCGGCC GCGCGCTGTC GGCGCTTGCA AAACTGGATT GGAAATGA
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Protein sequence | MVGPNIDKCD IAIVGGGLAG GLAALALAAK RPDLDIRLIE PGPVGGNHIW SFFDSDIAKK DRWLVAPLVR HHWPRYDVRF PAHARTLHMG YKSITGEALA EAVAAALPDG HIIADRAKHV APDHLLLARG GRLSAKHVLD ARGAGKFPTL DCGWQKFVGQ ALTVKGGHGV EQPVVMDATV EQLDGYRFVY LLPFDAETLF VEDTYYSDDA DLDEMVVRER IAAYAAAQGW QVTATMREES GVLPVVIAGD FDRLWPESDR TSRIGVRAGM FHATTGYSLP HAVRTAAALP ALVGRADLPA LLRARAQSAW RRQRFYRMLD AMLFRAADPD RRYRIFERFY RLSPRLVARF YAGRSTAADR LRLLAGKPPV PVGRALSALA KLDWK
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