Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sala_2413 |
Symbol | |
ID | 4080851 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingopyxis alaskensis RB2256 |
Kingdom | Bacteria |
Replicon accession | NC_008048 |
Strand | - |
Start bp | 2548517 |
End bp | 2549764 |
Gene Length | 1248 bp |
Protein Length | 415 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 638010792 |
Product | cystathionine beta-lyase |
Protein accession | YP_617454 |
Protein GI | 103487893 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0626] Cystathionine beta-lyases/cystathionine gamma-synthases |
TIGRFAM ID | [TIGR01324] cystathionine beta-lyase, bacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.190027 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAGGATA ATCATGACGG AAAATGGCTC GAGGAGCCGG CGAGCCCGAA AGGGCACGCT TGGCAGGATC CGACGCGTGC CGTGCACGGC GGTCCCCGCC CGCGCGATCA GCGGGGCCTC ATCAATCCGC CCGTCGATCG AGCCTCGACC ATTATCTACG ACAGCGTCGA GGCCTATATG GACCGGCACC AGGGTCTCTA CGATGAGGTC ATCTATGGCC TGTACGGAAC GCGAACGACC TTTGCGCTCG CCGAGGCTGT CAGCGAACTT GAAGGCGGCT GCAACACCGT CATCACCTCG TCCGGAACCA GCGCGATCGC GCTGGCCCTC ACGGCTTTCG TGGCCGGGGG CGATCATCTG CTCGTTGCGG ATTGCGTCTA TGGGCCGACC CGCAAGTTTC TGACCGACGT TCTCGCGCGT TTCGGGGTCG AGGTGGAATA TTTCCGGCCC GATATCGGAG CGGAGATTGC CGGGCTGTGC CGCAGCAACA CCCGGCTCAT CTATATGGAG ACCCCGGGCT CGCAGACATT CGATATGATC GACGTCCCCG CGATCACGGC CGTTGCACGC AGCCGGGGCA TATTGACCGC TCTCGACAAC ACCTGGGCGA CGCCGCTTTT CTTCAAGCCC TTGGCCCACG GGGTCGACAT CTCGCTTGCT TCGGCAACCA AATATCTCTC GGGGCACTCC GACTGTCTGC TCGGCACGAT GACGGCCGCC AGTGATGCCG TCTACCGCCA GCTCAAGGAC GCGGCGGCGC GCTGGGGCAA CTGCGCGAGT CCCGACAATT GCTATCTGGT CCACCGGGGC ATCAGGACGC TCGATGCGCG CCTTGAACGC CACCAGCGTA CCGCGGCGAC GCTGATCGAA TGGTTCGCCC AGCAACCCGA AGTGGTTGCG GTCCGCTATC CGGCTCATCC CGCCGACCCC GGCCATGCGA TCTGGAAGCG GGATTTCACC GGTGCGTCCG GATTGTTCGG TGTTCAGCTC GACGGTCTTA CCCCGCCCCA AACTAGCGCC TTTTTCAACG AATTCTCGTT ATTCCAGCTG GGTTCGAGCT GGGGCGGCTT CGAAAGTCTC GCGGTTCCGG CGTGGCCCGC TCCGATCCGC GATTTTCCGA ATGGCGAGGC AGATGGGGCG CTGATCCGCA TTCACGCCGG ACTCGAAGCG CCGCAGGATC TGATCGCCGA CCTCGCCGCA GCCTTCGCGC GGGTACGAGC GCTACGCGGC CGGGGGCAGG CGTCATGA
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Protein sequence | MQDNHDGKWL EEPASPKGHA WQDPTRAVHG GPRPRDQRGL INPPVDRAST IIYDSVEAYM DRHQGLYDEV IYGLYGTRTT FALAEAVSEL EGGCNTVITS SGTSAIALAL TAFVAGGDHL LVADCVYGPT RKFLTDVLAR FGVEVEYFRP DIGAEIAGLC RSNTRLIYME TPGSQTFDMI DVPAITAVAR SRGILTALDN TWATPLFFKP LAHGVDISLA SATKYLSGHS DCLLGTMTAA SDAVYRQLKD AAARWGNCAS PDNCYLVHRG IRTLDARLER HQRTAATLIE WFAQQPEVVA VRYPAHPADP GHAIWKRDFT GASGLFGVQL DGLTPPQTSA FFNEFSLFQL GSSWGGFESL AVPAWPAPIR DFPNGEADGA LIRIHAGLEA PQDLIADLAA AFARVRALRG RGQAS
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