Gene Sala_0410 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSala_0410 
Symbol 
ID4081729 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingopyxis alaskensis RB2256 
KingdomBacteria 
Replicon accessionNC_008048 
Strand+ 
Start bp420204 
End bp420824 
Gene Length621 bp 
Protein Length206 aa 
Translation table11 
GC content58% 
IMG OID638008768 
Producthypothetical protein 
Protein accessionYP_615465 
Protein GI103485904 
COG category[S] Function unknown 
COG ID[COG3247] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.144489 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.754821 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAACAC TGGCACATAA AATCCCATTC CCGGTCTGTA GTCTAGTAGG AAACTGGTGG 
ACTTTCGTTT TGCGCGGTGT GCTTGCGCTG ATCCTTGCGG TGCTCGCGGT GCTGATGCCT 
GCCAGCGCCT TGCTCGGGCT GACAATCATC TTCGGTGCCT TCTCGATGGT AGACGGAATA 
TTCTCGCTTA TCGCGGCTTT TCGCAACATC CGCGCGGGTG AGAAGTGGGG TTGGCTGGCA 
TTCAACGGCG TGGTCGGCAT CGGTACTGGT ATTGTTGTGC TGATTACTCC GATGATGGCC 
AGTTTCGTGC TTTCGCTGTT CCTTTGGTGG ATGATCGCAT TCTGGTCGTC TGCCTCGGGC 
ATCGCCCAGA TCGTGACCGC CATTCGGCTG CGCAAGGAAA TCAAAGGCGA GTTTTGGCTG 
GGGCTAGGGG GTCTGTTGTC CCTTGCGCTG GCCGGCTTCG TAATCTGGAT GCTCTTGACT 
GCTCCCGTCG AGACATTCCT CGCCTTGGGC TGGGTCCTCG CGTTCTACGC CGCGATGTTC 
GGAACTGTCA TGCTGCTCCT TGGCTTTCGC TTGCGGCGCG CGGCGAAGGC GGATGATACA 
GGCGTACAGC CGGCGAGCTA G
 
Protein sequence
MATLAHKIPF PVCSLVGNWW TFVLRGVLAL ILAVLAVLMP ASALLGLTII FGAFSMVDGI 
FSLIAAFRNI RAGEKWGWLA FNGVVGIGTG IVVLITPMMA SFVLSLFLWW MIAFWSSASG 
IAQIVTAIRL RKEIKGEFWL GLGGLLSLAL AGFVIWMLLT APVETFLALG WVLAFYAAMF 
GTVMLLLGFR LRRAAKADDT GVQPAS