| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SYO3AOP1_1550 |
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| Symbol | |
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| ID | 6331849 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sulfurihydrogenibium sp. YO3AOP1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010730 |
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| Strand | + |
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| Start bp | 1593549 |
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| End bp | 1594442 |
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| Gene Length | 894 bp |
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| Protein Length | 297 aa |
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| Translation table | 11 |
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| GC content | 29% |
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| IMG OID | 642657825 |
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| Product | Tetratricopeptide TPR_2 repeat protein |
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| Protein accession | YP_001931702 |
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| Protein GI | 188997451 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | [TIGR02521] type IV pilus biogenesis/stability protein PilW |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.000000389536 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAGA ATTTTTTTGC TTTAACTTTA GCTATTTTAA TAAGTTCTTG TGCTAATCCT
CAATCATATG AATCTGATTT AAGAGTCGGG GATGGAAAAT ACTTATACGA AATGGGTATA
TCTTACTTAA ACAGCGGAAA TAATGCAATG GCAATTAAAT ATTTAGAAGA AGCCTTAAAA
TCTTATGACA AACCAGAGGT CTACAATGCC CTTGCCCTTG CTTATCAATT TGCTGGGGAG
TTTACTAAGG CTGAAGCCAT TTTCAGACTT GGAATAGATA AATATCCTGA TTATCCAGAA
TTATTAACAA ATTATGGAAT TCTACTGGCC AGTCAAAAAA AGTTCAATGA AGCAATAAAA
TACTTTGAAA AAGCTATAAA TAATCCTACA TATTCAGGAA AAGAAAAGGC TTATTATAAC
CTTGGTATGG TTTACCTTCA ATTAGGCAAA GAAGATTTAT TTTTATCTAA CTTAGAAAAG
GCTTTGATGT TTAACAGCAA TTTTGTAAAT GCGTATATTA CCTTAGGAGA TTATTATTTA
GATAAATACA ATGCGGCCCA TAACAAGGAA ATGTTAAAAA AAACCAGAGA ATATTACTCA
AAAGCATTAA ATTATGTTGC AAATGACCCA TCAATCTATT TTAGGCTTGG AAAAGTTTAT
CATGAACTTG GAGATGATGA GCTTGCCAAA TATTACCTTG AAAAAGCCCT AAGGTCTGCT
GAAAATAATA CAGGATTAAA AGAAGAAATT AGAAAGTATT TATTAGAAAT TTTAGATAAA
CCAAAATCGA AAATTAATTT AAATGAAGAA AATAAAAAAC ATTCAAATAC TATTGAGGAT
AAAAATAATG ATGGAAATTC TATACTAAGT ATATTAAATA AGGGTGAAAA ATGA
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| Protein sequence | MKKNFFALTL AILISSCANP QSYESDLRVG DGKYLYEMGI SYLNSGNNAM AIKYLEEALK
SYDKPEVYNA LALAYQFAGE FTKAEAIFRL GIDKYPDYPE LLTNYGILLA SQKKFNEAIK
YFEKAINNPT YSGKEKAYYN LGMVYLQLGK EDLFLSNLEK ALMFNSNFVN AYITLGDYYL
DKYNAAHNKE MLKKTREYYS KALNYVANDP SIYFRLGKVY HELGDDELAK YYLEKALRSA
ENNTGLKEEI RKYLLEILDK PKSKINLNEE NKKHSNTIED KNNDGNSILS ILNKGEK
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