Gene SO_2037 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_2037 
Symbol 
ID1169787 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand+ 
Start bp2134109 
End bp2135068 
Gene Length960 bp 
Protein Length319 aa 
Translation table11 
GC content42% 
IMG OID637343909 
Productphage integrase family site specific recombinase 
Protein accessionNP_717640 
Protein GI24373597 
COG category[L] Replication, recombination and repair 
COG ID[COG4974] Site-specific recombinase XerD 
TIGRFAM ID[TIGR02249] integron integrase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTCTAA AAAGCCCATT TCTAAGCGGC CTTCAACAAG AAATGCGTAT GCGTGGTTAC 
AGTATTAGAA CGGAAAAAAC CTATCTGTAT TGGATCAAGG CATTCATTAA CTTTCACGGC 
AAGCGTCACC CAGAAACAAT GGGAACGGAA GAAGTTGCAC AATTTTTAAC CTTCCTTGCC 
AATCAACGAA ATGTGGCCAT CAACACACAA AAAATTGCAC TTAACGCATT AGCCTATTTG 
TATCAGAAGC ATTTGCACCA TGAGCTTGGG GATTTAGGTT TTTGCTATGC CACTAAACAG 
AGATATTTAC CGACAGTGTT ATCCCCATCA GAAATCTCAC TAATACTAAA TGAACTTGAT 
GGCCGCGATA GGCTAATAAT AGAACTACTC TATGGTAGTG GACTAAGAGT TTCAGAATGC 
CTCAGGTTAC GTATCCAAGA TATTGATATT GAGAGCGCTT CGCTGACCGT TAGAGACGGT 
AAAGGACATA AAGATAGGCA AACCATCCTC AGCCATAGAT GCGCAGAAAA GCTCACAACA 
TATATTGAAA AGGCTATTAA GATTCAACAG GATGACAACC AGCAAGGGAT AGGTCCATCT 
CTGCCAAATG CATTAGAACG TAAGTATCCC AATGCGTTTA GGCAACACGG GTGGATGTTT 
ATTTTCCCTT CAACATCAAC CTGTATCAAT CCTTATACAG GAACACTTTG CAGGCATCAT 
CTACATCAAA GTGTTATTCG TAAAGCGCTC GGGAATGCCG TGCGTAATAT TCAAATGAAT 
AAACGCGTCA CCTGCCATAC GTTTAGGCAT AGCTTCGCAA CCCATTTGCT TCAAGCTGGT 
CGTGATATAA GAAGTGTTCA AGAGTTACTG GGCCACAATG ACGTTAGTAC CACACAAATC 
TATACACATG TACTTGGCCA ACATTTTGCG GGGACAACTA GCCCGTTAGA CACATTATAA
 
Protein sequence
MSLKSPFLSG LQQEMRMRGY SIRTEKTYLY WIKAFINFHG KRHPETMGTE EVAQFLTFLA 
NQRNVAINTQ KIALNALAYL YQKHLHHELG DLGFCYATKQ RYLPTVLSPS EISLILNELD 
GRDRLIIELL YGSGLRVSEC LRLRIQDIDI ESASLTVRDG KGHKDRQTIL SHRCAEKLTT 
YIEKAIKIQQ DDNQQGIGPS LPNALERKYP NAFRQHGWMF IFPSTSTCIN PYTGTLCRHH 
LHQSVIRKAL GNAVRNIQMN KRVTCHTFRH SFATHLLQAG RDIRSVQELL GHNDVSTTQI 
YTHVLGQHFA GTTSPLDTL