| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_0004 |
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| Symbol | |
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| ID | 1167902 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 4058 |
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| End bp | 5683 |
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| Gene Length | 1626 bp |
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| Protein Length | 541 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637342013 |
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| Product | inner membrane protein, 60 kDa |
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| Protein accession | NP_715646 |
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| Protein GI | 24371604 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0706] Preprotein translocase subunit YidC |
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| TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain
[TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAATCTC AACGCAATAT ATTGCTAATA GGACTACTGT TTGTCAGCTT TTTGCTGTGG
CAACAGTGGC AAGCAGACAA AGCTCCAAAA CCCGTTGCAA CCGAATCGTC TGTAGTGGCG
AATGCAACCA CTAACCACAG TGCTGATGTT CCAGAAGCGG ATACAGGCGT GCCAGCAGCA
GTCGCGGCTA CGCAAAATCT AATCACGGTT AAAACCGATC AGCTAGATGT ACAAATCAAC
CCTGTGGGTG GTGACATTGT TTATGCTGCA CTGGTTTCAC ACAAGTTGGA ACAGGGTAAA
GACCAGCCAT TTGTTTTGCT TGAGCAAACC AAAGATTTCA CCTATATCGC GCAGAGCGGC
CTAATTGGTC GTGATGGTAT AGATAGCAGT GCTAAGGGTC GCGCCATATT TGCCGCAAGC
AAAACCGAAT TTACCCTAGC CGATGGCCAA GACAGTTTAG AAGTACCACT GACCTATGTA
GCTGAGAATG GTGTGACTTA CACGAAAGTG TTTGTATTCC ATCGCGGCAA GTTTAATGTC
AATATCGATT ACAAAATCAA CAACACTTCA GCGGCACCAT TACAAGTTCA GATGTACGGT
CAGATTAAAC AGACCATCAA GCCATCTGAA AGCAGCATGA TGATGCCAAC TTACCGTGGC
GCCGCATTCT CTACTGCCAG CGTGCGTTAC GAAAAGTACA ACTTCGAAGA TATGGGCAAA
AATAACCTCA ATCAACCGAC TATCGGTGGT TGGGCTGCGA TGTTGCAACA TTACTTCGTA
TCAGCTTGGA TCCCACCAGC AACAGATAGC AACACCATTT TCTCAAGTGT GAGCGCTGGC
GGTTTAGCCA ATATTGGTTT CCGTGGTGCG GTATACGATG TTGCACCTGG TGCAACTCAA
GAAATTAGCT CTCAATTCTA TGTCGGCCCT AAGGATCAAA AAGCGCTGTC AGCGTTATCT
GATACCTTAA ACCTAGTAGT CGATTACGGT TTCCTCTGGT GGTTAGCAGT ACCAATCCAC
TGGTTATTGA TGTTCTATCA ATCATTTGTA GGTAACTGGG GTGTGGCAAT TATCCTGATC
ACCTTAACCG TTCGTGGTTT ACTGTTCCCG CTCACCAAAG CGCAGTACAC CTCAATGGCG
AAGATGCGTA ACCTACAGCC AAAACTGCAG GATTTGAAAG AACGCTTCGG TGATGACCGT
CAAAAGATGG GTCAAGCCAT GATGGAACTG TACAAGAAGG AAAAAGTTAA CCCTATGGGT
GGCTGTTTAC CTATCCTGTT ACAGATGCCA ATCTTCATCG CTTTATACTG GGTATTGTTA
GAAAGCTTCG AGCTGCGTCA TGCGCCATTT ATGTTATGGA TCCACGACTT ATCGGTCCAA
GATCCTTACT ACATTCTGCC ACTGCTGATG GGTGTTTCTA TGTTCATCAT GCAGAAGATG
CAACCAATCG CACCAACGAT GGACCCAATG CAAGTGAAGA TGATGCAGTG GATGCCAGTG
ATCTTTACCG TATTCTTCCT GTGGTTCCCA TCAGGTCTGG TGCTTTACTG GTTAGTGGGT
AACATTGTAG CCATCATCCA GCAGAAGATT ATTTATGCAG GTCTAGAGAA AAAAGGCTTA
AACTAA
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| Protein sequence | MESQRNILLI GLLFVSFLLW QQWQADKAPK PVATESSVVA NATTNHSADV PEADTGVPAA
VAATQNLITV KTDQLDVQIN PVGGDIVYAA LVSHKLEQGK DQPFVLLEQT KDFTYIAQSG
LIGRDGIDSS AKGRAIFAAS KTEFTLADGQ DSLEVPLTYV AENGVTYTKV FVFHRGKFNV
NIDYKINNTS AAPLQVQMYG QIKQTIKPSE SSMMMPTYRG AAFSTASVRY EKYNFEDMGK
NNLNQPTIGG WAAMLQHYFV SAWIPPATDS NTIFSSVSAG GLANIGFRGA VYDVAPGATQ
EISSQFYVGP KDQKALSALS DTLNLVVDYG FLWWLAVPIH WLLMFYQSFV GNWGVAIILI
TLTVRGLLFP LTKAQYTSMA KMRNLQPKLQ DLKERFGDDR QKMGQAMMEL YKKEKVNPMG
GCLPILLQMP IFIALYWVLL ESFELRHAPF MLWIHDLSVQ DPYYILPLLM GVSMFIMQKM
QPIAPTMDPM QVKMMQWMPV IFTVFFLWFP SGLVLYWLVG NIVAIIQQKI IYAGLEKKGL
N
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