Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A3092 |
Symbol | |
ID | 6486829 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | - |
Start bp | 3008037 |
End bp | 3009107 |
Gene Length | 1071 bp |
Protein Length | 356 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 642738404 |
Product | surface presentation of antigens protein SpaS |
Protein accession | YP_002042128 |
Protein GI | 194444022 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1377] Flagellar biosynthesis pathway, component FlhB |
TIGRFAM ID | [TIGR01404] type III secretion protein, YscU/HrpY family |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 0.00000792926 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTCCTCGA ATAAAACAGA AAAACCGACT AAAAAACGGC TGGAAGACTC CGCTAAAAAA GGCCAGTCAT TTAAAAGTAA AGATCTCATT ATCGCCTGCC TGACGCTGGG AGGAATTGCC TATCTGGTGT CGTATGGCTC ATTTAATGAG TTTATGGGGA TAATTAAGAT CATTATTGCG GATAATTTTG ATCAGAGCAT GGCTGATTAC AGTTTGGCCG TTTTTGGGAT AGGGTTAAAA TATCTGATTC CATTTATGCT GCTCTGCTTA GTGTGTTCCG CATTACCGGC GTTATTACAG GCCGGTTTTG TGCTGGCGAC AGAAGCATTA AAGCCTAATT TATCGGCGTT AAACCCGGTA GAAGGGGCAA AAAAACTTTT TAGTATGCGC ACGGTTAAAG ATACGGTCAA AACCCTACTG TATCTCTCAT CCTTTGTGGT GGCCGCCATC ATTTGCTGGA AGAAATATAA GGTTGAAATC TTTTCTCAGC TAAATGGCAA TATTGTAGGT ATTGCCGTCA TTTGGCGTGA ACTTCTCCTC GCATTAGTAT TAACTTGCCT TGCTTGCGCA TTGATTGTCT TATTATTGGA TGCTATTGCG GAATATTTCC TGACCATGAA AGATATGAAA ATGGATAAGG AAGAAGTGAA GCGTGAAATG AAGGAGCAGG AAGGGAACCC AGAGGTTAAA TCTAAAAGAC GTGAAGTTCA TATGGAAATT CTGTCTGAAC AGGTGAAATC TGATATTGAA AACTCACGCC TGATTGTTGC CAACCCCACG CATATTACGA TCGGGATTTA TTTTAAACCC GAATTGATGC CGATTCCGAT GATCTCGGTG TATGAAACGA ATCAGCGCGC ACTGGCCGTC CGCGCCTATG CGGAGAAGGT TGGCGTACCT GTGATCGTCG ATATCAAACT GGCGCGCAGT CTTTTCAAAA CCCATCGCCG TTATGATCTG GTGAGTCTGG AAGAAATTGA TGAAGTTTTA CGTCTTCTGG TTTGGCTGGA AGAGGTAGAA AACGCGGGCA AAGACGTTAT TCAGCCACAA GAAAACGAGG TACGGCATTG A
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Protein sequence | MSSNKTEKPT KKRLEDSAKK GQSFKSKDLI IACLTLGGIA YLVSYGSFNE FMGIIKIIIA DNFDQSMADY SLAVFGIGLK YLIPFMLLCL VCSALPALLQ AGFVLATEAL KPNLSALNPV EGAKKLFSMR TVKDTVKTLL YLSSFVVAAI ICWKKYKVEI FSQLNGNIVG IAVIWRELLL ALVLTCLACA LIVLLLDAIA EYFLTMKDMK MDKEEVKREM KEQEGNPEVK SKRREVHMEI LSEQVKSDIE NSRLIVANPT HITIGIYFKP ELMPIPMISV YETNQRALAV RAYAEKVGVP VIVDIKLARS LFKTHRRYDL VSLEEIDEVL RLLVWLEEVE NAGKDVIQPQ ENEVRH
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