| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_2976 |
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| Symbol | |
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| ID | 4115698 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rubrobacter xylanophilus DSM 9941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008148 |
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| Strand | - |
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| Start bp | 2980712 |
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| End bp | 2982283 |
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| Gene Length | 1572 bp |
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| Protein Length | 523 aa |
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| Translation table | 11 |
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| GC content | 76% |
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| IMG OID | 638037746 |
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| Product | PgdS peptidase. cysteine peptidase. MEROPS family C40 |
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| Protein accession | YP_645698 |
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| Protein GI | 108805761 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0791] Cell wall-associated hydrolases (invasion-associated proteins) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGCGAA GGCTGAGTCT CGTGGTGTTT TTCGGCGTTC TACTGGGGAC GCTTCTGGCG
ACCGGGATCA CGGCCGGCGC CTCGCCGCAG GACGTGAGGG AGAAGAGGGC CGAGGTCGCC
AGCGCTAGGG ACCGGCTCGT GGAGATCCGG CGGGAGGCTG CGGCCTCCTA CGAGGCGTAC
AACCAGGCGC TCTACCAGCT CAACCGGCTG GACGCCAGGA TCTCGGCGAC GCGGGAGGAT
CTCGCGGACG CCGAGCGCCG CTACGCCGAG GCGCGCAGGG AGCTCGAGGA GCGGGCCTCC
CAGGTCTACC GGAGCGGCAA CGTCGCGTTT CTCGACGTGC TCGTCGGGGT GGACAGCTTC
GCGGAGTTCT CGGCCCGGCT CGACCTCTGG CTGAGGCTGC TGCAGCAGGA GCAGGCCGAG
CTCGCCGCCG TCCGGCAGGC CAAGCAGGAG CTCGAGGCGC GCCAGGCGGC GCTCGAGAGC
CAGCGCGAGG AGCGGGTCGC CGCCCTGCGG GAGGCCGCCG AGCAGAAGGA GCGCGCCGAG
CAGGCCCAGA GCGAGGCCCG GACCTACCTC GCCTCTCTCA ACCGGGAGCT GCGGGCCGCC
ATCCGGGCCG AGGAGCAGCG GCAGGCCGAG CTCGCCCGCC GGGCGGCCGA GGAGGCCGCG
GAGCGGGCGG TCGAGGCGGT TCCCGTGGCA CGCACCGCGA GCGCGCCCGC GGTAACCCGG
GCGGAGCTGG AGGCCAGGCG TCAGGCCGCC GCCGAGGCCC GGCAGCGCGC CGAGGAGCTC
GCCGCCCGGC GGGCCGCGCA GCAGGAGGCC GCCGAGCGCG CCGCCCGGCA GGCCGAGCTC
GCCGCCCGGC GGGCCGCGCA GCAGGAGGCC GCCGAGCGGC GGCGGGCCGC CCAGGAGGCC
CGCGAGGCCG CGAGGCAGGC GGCCATAGAG CAGGAGGCAG CCGAGCGCGC CGCCCAGCAG
GCCGCCGCGC AGCAGGAGGC CGCCGAGCGC GCCGCGGCGC AGCAGGAGGC TGCCCAGCAG
GAGGCCGCCG CGCAGGAGGC TGCGCAGCAG CAGGTCCGGC CGCAGCCGGA GCAGCAGGTC
GCCGCGGACC AGACCGCGCC CCAGCAGCAG GCGGCCTCTC CCGAGTCCTC CTCCGCCTCC
CAGCAGTATC CCTCTTCTGG CAGCGGCGGG GGCGCCACCC AGCAGCAGCC CTCGGCGGGT
GGCGGCTCCT CCACCGGGGT GAGCGGGGAG GCCATAGTCG CCGAGGCCCG CAAGTACCTC
GGGGTGCCCT ACGTGTACGG CGGGGCCTCC CCGGACCAGG GCTTCGACTG CTCCGGGCTC
GTGATGTACG TCTTCGCCCA GTTCGGCATC TCCCTGCCGC ACTCGGCGGC CGCCCAGTAC
GGCTACGGCT ACTCCGTCTC CACGCCGGGG CCGGGCGACG TGGTCTTCTG GGCCCAGGGC
GGCGGGGGCA TCACCCACGA TGGCATAGCC ACGGGCAGCG GGACCGTGAT CCACGCCCCC
TACCCCGGCA CCGTGGTCCG CGAGGAGGCC ATCTGGTCCG ACGGCTACGT GGGGGCGAAG
CGTCTGATCT GA
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| Protein sequence | MPRRLSLVVF FGVLLGTLLA TGITAGASPQ DVREKRAEVA SARDRLVEIR REAAASYEAY
NQALYQLNRL DARISATRED LADAERRYAE ARRELEERAS QVYRSGNVAF LDVLVGVDSF
AEFSARLDLW LRLLQQEQAE LAAVRQAKQE LEARQAALES QREERVAALR EAAEQKERAE
QAQSEARTYL ASLNRELRAA IRAEEQRQAE LARRAAEEAA ERAVEAVPVA RTASAPAVTR
AELEARRQAA AEARQRAEEL AARRAAQQEA AERAARQAEL AARRAAQQEA AERRRAAQEA
REAARQAAIE QEAAERAAQQ AAAQQEAAER AAAQQEAAQQ EAAAQEAAQQ QVRPQPEQQV
AADQTAPQQQ AASPESSSAS QQYPSSGSGG GATQQQPSAG GGSSTGVSGE AIVAEARKYL
GVPYVYGGAS PDQGFDCSGL VMYVFAQFGI SLPHSAAAQY GYGYSVSTPG PGDVVFWAQG
GGGITHDGIA TGSGTVIHAP YPGTVVREEA IWSDGYVGAK RLI
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