| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rru_A0396 |
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| Symbol | |
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| ID | 3833807 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodospirillum rubrum ATCC 11170 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007643 |
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| Strand | - |
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| Start bp | 472310 |
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| End bp | 473587 |
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| Gene Length | 1278 bp |
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| Protein Length | 425 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637824480 |
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| Product | diaminopimelate decarboxylase |
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| Protein accession | YP_425488 |
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| Protein GI | 83591736 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0019] Diaminopimelate decarboxylase |
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| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0943424 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATTATT TCTCTTACCG CAACGGCCAA CTCCACGCCG AGGATGTCGC CCTCGCCGCC
ATCGCCGAGG CCGTCGGCAC GCCCTTCTAT GTGTATTCGG CCGCCACGCT CGAACGCCAT
TTCCGGGTGT TCTCGGACGC CTTCGCCGGC CAGCCGATAA CCCTGTGCTT CGCCACCAAG
ACCAATGGCA ACAAGGCGGT GCTCGCCCTG CTTGCCGGCC TGGGCGCCGG CGCCGACGTG
GTCAGCCAGG GCGAGATGGA ACACGCCCTG GCGGCGGGCG TCCCGGCCGG GCGCATCGTC
TTTTCCGGGG TCGCCAAAAC CAAGGCCGAA ATGGCCGCCG CGCTTGAGGC CGGCATCTTC
CAGATCAACG TCGAATCCGA GCCCGAGCTC GAGGCGCTGT CCGAGGTCGC CCAGGCCCTG
GGCAAGACCG CGCCGGTCGC CCTGCGCATC AATCCCGATG TCGCCGCCGC CACCCACGAC
AAGATCGCCA CCGGGCGCAA GGAAAACAAA TTCGGCATCG ACTGGACCGT CGCCCCCGCC
ATCTTCGCCA AGGCCGCCGG CCTGCCCGGC ATCGCCGTCA AGGGGGTCGC CGTCCATATC
GGCTCGCAGA TCCTCGATCT TGATCCCTTC CGCCGCGCTT TTGAGCGCCT GCGCGAGCTG
GTGCTGGCCC TGCGCGCCGA CGGCATCGCC CTCGAGCGTG TCGATCTTGG CGGCGGCTTG
GGCATCCCCT ATCACCGCGA CGATCCGGCA AGCCCGCCGC CGGCCGAGTA CGCCGCCCTC
GCCCGCCGCA TCTTCGGCGA CCTGGGCGTG CATCTGGTGG CCGAACCCGG GCGGCTGATC
GCCGGCAACG CCGGGATGCT GGTCTCCCGC GTCGTCTATC GCAAACAGGG CGAAACGCGG
ACCTTCCTGA TCCTCGATGC CGGCTTCAAC GACCTGATCC GTCCGGCGAT GTATGACGCC
TTCCACGATA TCCTGCCAGT CACGGCCGCC GCCGAGAACG CCGTGCTGAC CCCGGTCGAT
GTGGTCGGGC CGATCTGCGA ATCGGGCGAT ATCTTCGCCC GCCAGCGCCC GCTGCCGCCG
ATCGCCGCGG GGGATCTGGT GGCCTTCGCC ACCGCCGGCG CCTATGGCGC CTCGATGTCG
TCCACCTACA ACGGCCGGCC GCTGGTGCCC GAGGTGATGG TGTCGGGGGA TCGCTTCGCC
GTAGTCCGCC GCCGCCCCAG CGTCGCCGAA ATGACCGCTT TGGAATCGGT GCCGCCGTGG
CTGGCCAAGC AAGCATAG
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| Protein sequence | MDYFSYRNGQ LHAEDVALAA IAEAVGTPFY VYSAATLERH FRVFSDAFAG QPITLCFATK
TNGNKAVLAL LAGLGAGADV VSQGEMEHAL AAGVPAGRIV FSGVAKTKAE MAAALEAGIF
QINVESEPEL EALSEVAQAL GKTAPVALRI NPDVAAATHD KIATGRKENK FGIDWTVAPA
IFAKAAGLPG IAVKGVAVHI GSQILDLDPF RRAFERLREL VLALRADGIA LERVDLGGGL
GIPYHRDDPA SPPPAEYAAL ARRIFGDLGV HLVAEPGRLI AGNAGMLVSR VVYRKQGETR
TFLILDAGFN DLIRPAMYDA FHDILPVTAA AENAVLTPVD VVGPICESGD IFARQRPLPP
IAAGDLVAFA TAGAYGASMS STYNGRPLVP EVMVSGDRFA VVRRRPSVAE MTALESVPPW
LAKQA
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