| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_1495 |
|---|
| Symbol | |
|---|
| ID | 6286654 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | - |
|---|
| Start bp | 1584708 |
|---|
| End bp | 1586681 |
|---|
| Gene Length | 1974 bp |
|---|
| Protein Length | 657 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 642625060 |
|---|
| Product | integrase catalytic region |
|---|
| Protein accession | YP_001899066 |
|---|
| Protein GI | 187928579 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.000170756 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCGCA AACCGGAGCT CCAGCATCTC GACCTCGCGT CCTGGCCGTC AGTTGCATGG
ACGGAGCTCA CGGAGGGGCG TCAGCAGCGG GTACGCATGG CGACTGCCGC CATCGAGCGC
TATGCACGAG GCGACGCTAT CGACGAAATT GAACTGTCCA CCGGTATCGA TCGTCGCCAA
CTATATCGGT GGTTGTATCG TGCGTTGCAG ACACACCCCG ATGGACGGAT CTGGGGCTTT
CGCGCCGTCA TTCCCAATGT GCGGATTGCC GAATACGCGC GCGTTGCCCC TATCGTCGTC
CAGGGGCAGA CCGGCAGTCG CGGTACGGCC GGGGCGATAT CGCAAATCTT CGAGAGCCAT
CCCGCCTTGG TGACGTGGCT TCGGGCTCAG ATTCGGCAAC GCAAGGTCGT GCTGCATCAG
GTCAGCACGG ATGGCAAGCT CAAGACGCGC CTGCGCGGCC TGAAAGCCCT GCATGAGGAG
TTCCTGAAGC AATGTCGGTC GCTCGGTCTG AAGGCGACGG ACTACCCGCT CTGTATGGAC
TATTTGGCAA TCCGCTCGTT GTCCAACCGG CTCAAGGCGG AAATGCTGCG CTCCTTCGGC
CAAGCTGCGC GCGCGGCGGG CGCCTCTCAC CTCAAAGGCT TGCCCCTGCA GGACGGACAT
GCCGTATCGC CCGCGGCCGT GCGCCCCTAT CAGGTCGTGG AATTCGACGG GCACCGTCTG
GATGTTCGGC TCAAGGTGGT GGTACGTGAC CCTTTGGGTT TTGAGCACGA GTTCGAAATG
GAGCGCATCT GGCTGCTGGT CATCATCGAC GTTTGCACTC GCGCGATCCT GGGTTATCAC
GTCGTGCTCG CGCGCGAGTA CAGCCGTCAT GACGTGATCA AGACGATGGA GAAGGCACTG
GAGCCTCATC GCCCCATGAC CTTCACCCTT CCCAATCTCG CGTACTCCAA GCACGATGGC
CTGCCGTCGC AAAAACTGCC CGAGCTCGCC TACGCTTGCT GGGAGTGGAT CAAGCTCGAC
AACGCCAAAG CAAATCTTGC CAACGACACG CTCAGTGCCT TGTGCGAGTT CGTGGGTTGC
ATTGTCGATG CGGGCCCTTA TCACCACCCG GACGAGCGCC CCTACATTGA GCGTTTCTTT
GCGACCATTG CGCAAGAGAT GTCGTCGCGT CTGCCTGGCT ACACCGGATC GCATCCGCGT
GACCTTCGGC GTGCGCTGTC CGATCCGAAG GGCAATCTCC GCTTGTACCT GTCCTCCGAT
GAGCTGACGG AACTCGTCGA ATATGCCATC GCCAGTTACA ACGGTACACC GCACAGCGGG
CTGAACAACA TCACGCCTCT GGAGGCCATG GAGCGGTTGA TCCGTGTCAA GCAGAGCATG
CTCTCCTGGT TGGCCGAGCA TCGGCGTCGC ACGCTGTGCC TGATGCAAAC CGCGTCGAGG
CACACGGTGC GTGCCTACTT GCACCAAGGT GTGCGTCCTC ACATCAACCT GCACGGTGTG
CGCTACACCA GCACAACCCT GGCAGCGGCG ACGCATCTGA TCGGTACGAA GCTGCTTGTC
TATTCCAACG TCGAAGACCT GCGCGGCGTA CGGGCGTTTC TCGCGGATGG AGCCGAGTTG
GGGCCATTGC AGGCGCAGGG CGCGTGGGGC CTGGTGCCCC ACGATTTGCG GCTGCGCAAA
GAGATCCTGA AATGGCGTAA GAAGCGCGGC ATGCGCAAAG GGATGGAAGG CAACGTGATC
GAGGCGTTCG TCCAAGAGAA GCTGGCGCAC GCCAAACACA CACGCAAAGC CGCCACGGAT
CTCGCGCACG TCATCCGTGT TTTGTCGACT GCGCCGACGA TCTACACGCC TTTGCGACCC
ACCGTACCCA TTTCTGCGCC GCTTTCCAAT GCCGTCGCTG ACGATTCACC ATCGCCGCCG
CCAGCGCCCG GTGTACCACG CCGCCTCACG ATTGGTACGG GACTGATTTC CTAG
|
|---|
| Protein sequence | MRRKPELQHL DLASWPSVAW TELTEGRQQR VRMATAAIER YARGDAIDEI ELSTGIDRRQ
LYRWLYRALQ THPDGRIWGF RAVIPNVRIA EYARVAPIVV QGQTGSRGTA GAISQIFESH
PALVTWLRAQ IRQRKVVLHQ VSTDGKLKTR LRGLKALHEE FLKQCRSLGL KATDYPLCMD
YLAIRSLSNR LKAEMLRSFG QAARAAGASH LKGLPLQDGH AVSPAAVRPY QVVEFDGHRL
DVRLKVVVRD PLGFEHEFEM ERIWLLVIID VCTRAILGYH VVLAREYSRH DVIKTMEKAL
EPHRPMTFTL PNLAYSKHDG LPSQKLPELA YACWEWIKLD NAKANLANDT LSALCEFVGC
IVDAGPYHHP DERPYIERFF ATIAQEMSSR LPGYTGSHPR DLRRALSDPK GNLRLYLSSD
ELTELVEYAI ASYNGTPHSG LNNITPLEAM ERLIRVKQSM LSWLAEHRRR TLCLMQTASR
HTVRAYLHQG VRPHINLHGV RYTSTTLAAA THLIGTKLLV YSNVEDLRGV RAFLADGAEL
GPLQAQGAWG LVPHDLRLRK EILKWRKKRG MRKGMEGNVI EAFVQEKLAH AKHTRKAATD
LAHVIRVLST APTIYTPLRP TVPISAPLSN AVADDSPSPP PAPGVPRRLT IGTGLIS
|
|---|
| |