Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_0462 |
Symbol | |
ID | 6287084 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010682 |
Strand | - |
Start bp | 493734 |
End bp | 495053 |
Gene Length | 1320 bp |
Protein Length | 439 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 642624026 |
Product | integrase family protein |
Protein accession | YP_001898049 |
Protein GI | 187927562 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG4974] Site-specific recombinase XerD |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.853167 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 0.68742 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCACAAGA TCCCCCGCCT TCTCCGGTCC CGTCACGGGG TCTACTACCT GCGCCTCACG CACGGCAAAA CCGACACTCG CCGCTCTCTC GGCACAAAAG ATTTCCAGCG GGCTAAACTG TCCGCTTTGT TACTGAACGT GCACGTTGAG ATGAGCAAGT CGCGCCTTGA TGCTGAGATG TTCCGTCACC TCGATATCGC GCTGCCGAAC GGGGTCAAGC TCACGAATAT CCAGCCCGAG GACAAGGGCA TTCTGTTCGA CATTCTCGAC AAGCTCGGCG TGACAGGCGA ACAGCTCGCC GCGATGCCAA CAACGGAAGT TGCCAGGCTA CTGGCCGGTC CCGAGCCTCA GCGCATGGAG CCGCCGAAAC CGAAGAGCAA GCCGCTCTCC GACGTCATTG CGCTCTACCT CACAGAAAAG AAGCTCGATA ACGTAGCGAA AACACTGGAG GACAAGGAAC GCACCTTTAC CGAGTTCCAG GGGTTCTTCC AGGACAGCGA TATCAACGCC TTTGATGCCG ATACCGCAAT CGCCTACAAG AACCGGCTGC TCGCCGCCAA TGCGTCGGCC AGCCGAATCA ATGCGAAGAC CTCGTTCCTG AGGGATCTCT TCGCATACGC AATCAACAAT AACCTGTACT TCACCACCAA CCCGTTCGAG AAGGTCCGCG TCTCGAGCAA AACCAAGCTA AAACAACAAG TGGAATCCTA TCGAGAATTC ACGGACGACG ATCTCAAGCT GATCTTCGCC GAGGCACCGT ATCGGGAGTT CATGAACAAG CCCGACTATC ACTGGTTGCC GCTGCTTGCC CTCTACACGG GTGCTCGGGT CGAGGAGCTG GCAAGCCTGT CGCTGAACCA GATCAAGAAG GATGGCGGTA TTCACTACTT CGAGATCGAG AAAGCCAAGA ACCTCAATTC GATCCGCAAA ATCCCGCTAC ACCGGCAGAT CGAAACCTCG GGATTCCTGG CCTACGTGGA CAGCGTGCGC GCTCAAGGTG CGACGATGCT GTTTCCCCAC CTGACAGCGG GCAAGAACGG CTACAGCAAG AATATGTCGC GCCGATTCGG GGCTTACCTC GACTCGCTGA AGATCAGCGA TTCCCGCAAG GTGTTTCACT CGTTCCGCCA CACGTTCATT ACTCGTATGA CGGAATTGAA CGTCCACCCG GTGCTGGTCA TGTCCATGGT GGGGCACTAT GCGCAGGCGA AGGTGGATCT TTCTGCGCCG CACGTCGTCA ATTATCAGCA CGAGAAGCCG TTATCCGTTT TGAAGCAGAC CATTGACCGG CTGGAATTCC CGATCAAGCA TTTCTGGTAA
|
Protein sequence | MHKIPRLLRS RHGVYYLRLT HGKTDTRRSL GTKDFQRAKL SALLLNVHVE MSKSRLDAEM FRHLDIALPN GVKLTNIQPE DKGILFDILD KLGVTGEQLA AMPTTEVARL LAGPEPQRME PPKPKSKPLS DVIALYLTEK KLDNVAKTLE DKERTFTEFQ GFFQDSDINA FDADTAIAYK NRLLAANASA SRINAKTSFL RDLFAYAINN NLYFTTNPFE KVRVSSKTKL KQQVESYREF TDDDLKLIFA EAPYREFMNK PDYHWLPLLA LYTGARVEEL ASLSLNQIKK DGGIHYFEIE KAKNLNSIRK IPLHRQIETS GFLAYVDSVR AQGATMLFPH LTAGKNGYSK NMSRRFGAYL DSLKISDSRK VFHSFRHTFI TRMTELNVHP VLVMSMVGHY AQAKVDLSAP HVVNYQHEKP LSVLKQTIDR LEFPIKHFW
|
| |