| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_0034 |
|---|
| Symbol | |
|---|
| ID | 6287392 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | - |
|---|
| Start bp | 46398 |
|---|
| End bp | 47237 |
|---|
| Gene Length | 840 bp |
|---|
| Protein Length | 279 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 642623607 |
|---|
| Product | transcriptional regulator, AraC family |
|---|
| Protein accession | YP_001897631 |
|---|
| Protein GI | 187927144 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins
[COG3449] DNA gyrase inhibitor |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.255751 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCTTGCAC ACATCGACGC GCATCTGGAA GACACGCTGG ATGTAGACGG GCTGGCCGGG
GTGGCCGCGT TTTCCCGGCA CCACTTCCAC CGCCAGTTCT CGTTGCTGTT CGGCATGAAC
GTCGGGCGCT ATGTGCAGTT GCTGCGCCTG AAGCGCGCCG CGCATCAACT CGCCTATCGC
GACGATGCGC GCATCACCGA CATCGCACTG GCGTGCGGGT ACGAAGGGCC GGAGGCATTT
GCGCGGGCGT TCCGCAGGCA GGCGGGGCAA TCGCCGTCGG CATTTCGGGC GGCGCCGCAG
TGGACACCCT GGGCTACCGA TCTACAGGCG CTGCGCGCCC TCAGGAGCCA ACACATGCCG
GCACAACCGC AAACCCAATC CGTTGAGATC GTCGAGCGCG AGGCCGTCGC GGTCGCCGCC
ATCGAGCACC GCGGCGATCC CGCGCGCCTG AGCGAGACTC TCCGCACGTT CATCGTCTGG
CGCCGTGAGC ATCGGCTGCA CCCGAGCGTT TCGGCCACGT ACAACGTCGT CTACGACAAT
CCCGACGATG TGCCGCCCGA GGCGTTCCGC ATGGACATCT GCGCGGCCAC GCGCGCGCCG
ATCGCCCCCA ATGCAGCGGG CGTAGCGGGC AAGACGCTGG CGGGCGGCCG CTACGCCGTG
CTGCGCCACA CGGGCTCCGA CGACACGCTC GGCCAGAGCG TTGCGTACCT GTATGCCGAC
TGGCTGCCCG CCAGCGGCGA GGAATTGCGC GACGCGCCGC TGCTGTTCCA GCGCGTGCGC
TTTTACCCCG ACGTGCCCGA GCACGAAGCC GTGACGGACG TGCTGCTGCC GCTCAGGTGA
|
|---|
| Protein sequence | MLAHIDAHLE DTLDVDGLAG VAAFSRHHFH RQFSLLFGMN VGRYVQLLRL KRAAHQLAYR
DDARITDIAL ACGYEGPEAF ARAFRRQAGQ SPSAFRAAPQ WTPWATDLQA LRALRSQHMP
AQPQTQSVEI VEREAVAVAA IEHRGDPARL SETLRTFIVW RREHRLHPSV SATYNVVYDN
PDDVPPEAFR MDICAATRAP IAPNAAGVAG KTLAGGRYAV LRHTGSDDTL GQSVAYLYAD
WLPASGEELR DAPLLFQRVR FYPDVPEHEA VTDVLLPLR
|
|---|
| |