| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_3562 |
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| Symbol | |
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| ID | 8021249 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012857 |
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| Strand | + |
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| Start bp | 104756 |
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| End bp | 106534 |
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| Gene Length | 1779 bp |
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| Protein Length | 592 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644832353 |
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| Product | sigma54 specific transcriptional regulator, Fis family |
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| Protein accession | YP_002983494 |
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| Protein GI | 241665135 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.705523 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAAAAC GGCATCCGCG AAAACCCAAG CCCGACGCGA CGGCACCTGC ACGCCCCCAT
CGCGACACGA AACATACGGG CGCCACCGAG ATCCGCGTCC CGGCCATCCA CGACCTCGCC
AAACGCTTGC GCTTCGCGCC GCAGCAGGGC CGGATCTGGC TGGACGACCA GCGCATGATG
CTCATGCACA TCAGCTCGCT CGGCGCGCTG CGGCAGGAGC TGATCGAAAG CCTGGGCAAG
GAAACGGCAC GCGGGCTGAT CACCCGCATC GGCTATCAGG CCGGCACGCA CGATGCCGCC
ATGTCGCGCA AGGTGCGCGC CGGCTTCAGC AGCTACGACG ATTTCCTGGC GGGGCCGCAA
CTCGTGTCGC TCGAGGGCAT GGTCCATTGC GAGCCGGTCG CACTGGATAT CGACGTGCAG
CGTGGCCGCT ATTTTGGTGA CTTCTACCTG ATCGACAGTT CCGAGGCGGA GGCCCACATC
GCCAGCTACG GCATCGGCAA CGAGGCGGTG TGCTGGATGC TGATCGGCTA TGCGTGCGGA
TACACCAGCG CCTTCATGGG CCGCCCCATC CTCTGGCGCG AGATCGAATG TCGCGGCATG
GGGCATGCGA AATGCCGCGT GGTGGGCAAA CCCGTTGAAG AATGGGAAGA CGCCGAGGAC
GACCTGCGCT TCCTGCAGAT CGGCGATTTC GTCAAATGGG CGCCGCAACC CGAGGCCGCG
CTGCCGGCCA CGAGCCGGAT CGCCGCGCGG CTGTCGAACG CACCGGAAAA CAGCTTCGGC
GTGGTGGGAA TCTCCGCCGG TTTCAACACC GTCTGCCATA TGGTCAACAA GGTGGCCCCC
ACCGAAGCGA CCGTGCTGTT CCTGGGCGAG AGCGGCGTCG GCAAGGAGGT CTTCGCCAAC
AATCTGCATC GCCTGAGCAA GCGCGCAGAT GGGCCATTCG TCGCCGTCAA CTGCGCGTCG
ATTCCCGAGC ACCTGATGGA ATCGGAATTG TTTGGCGTGG AGCGCGGCGG TTTCACGGGC
GCAACCACGT CACGGCCCGG GCGCTTCGAG CGCGCCGACG GCGGCACGCT CTTCCTCGAC
GAGATCGGCA CGCTCAGCCT GACCGCACAG GGCAAGCTCT TGCGCGCCCT GCAGCAGGGC
GAAATCGAGC GCGTGGGCGA TACCCGCACG CGCAAGGTGA ACGTGCGGGT GATTGCCGCG
ACCAACGTGA ACCTGCGCGA AGCCGCCAAG GCGGGCCAGT TTCGCGAAGA CCTGTTCTTC
CGGCTGAACG TGTTTCCGAT CCAGGTCCCG CCGCTGCGCG AGCGGCGCGA CGACATCCCG
TTGATGATGA ACTGGTTCCT GCAGCGCATG GCCAAGAAGC ACGACAAGCA GATCACCGGC
TTTCGCGAAC GGGCCGTCGA CGCGCTGTTC GCCTACGACT GGCCGGGCAA TGTGCGCGAG
CTGGAGAACA TGATCGAACG CGCCGTGATC CTGGCCGAAG ATGGCGGCGC ACTGGACCTG
TGTCATCTGT TCACCAGCGG TGAGGAGATC GACACCGCCT CGTTCATCCT CAAGCGCAGC
GGCAATATCG GCCAGAGCAG TGACACGGTG GAAGACGTGG CCTCTTCCAC CACCGCCATT
CCACGTCCGG GCCTGGCCGA GACCGAGGTG GCGATGCTGC GTGCCGCGGT GATCGAGGCC
AACGGCAATC TGTCGCGCGC GGCACGGGTG CTCGGCATCA GCCGCCCGAC GCTGGCCTAC
CGGCTGCGCA AGTATCAGAT TCCAGTCGAT GGAAGCTGA
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| Protein sequence | MAKRHPRKPK PDATAPARPH RDTKHTGATE IRVPAIHDLA KRLRFAPQQG RIWLDDQRMM
LMHISSLGAL RQELIESLGK ETARGLITRI GYQAGTHDAA MSRKVRAGFS SYDDFLAGPQ
LVSLEGMVHC EPVALDIDVQ RGRYFGDFYL IDSSEAEAHI ASYGIGNEAV CWMLIGYACG
YTSAFMGRPI LWREIECRGM GHAKCRVVGK PVEEWEDAED DLRFLQIGDF VKWAPQPEAA
LPATSRIAAR LSNAPENSFG VVGISAGFNT VCHMVNKVAP TEATVLFLGE SGVGKEVFAN
NLHRLSKRAD GPFVAVNCAS IPEHLMESEL FGVERGGFTG ATTSRPGRFE RADGGTLFLD
EIGTLSLTAQ GKLLRALQQG EIERVGDTRT RKVNVRVIAA TNVNLREAAK AGQFREDLFF
RLNVFPIQVP PLRERRDDIP LMMNWFLQRM AKKHDKQITG FRERAVDALF AYDWPGNVRE
LENMIERAVI LAEDGGALDL CHLFTSGEEI DTASFILKRS GNIGQSSDTV EDVASSTTAI
PRPGLAETEV AMLRAAVIEA NGNLSRAARV LGISRPTLAY RLRKYQIPVD GS
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