| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_2166 |
|---|
| Symbol | hemC |
|---|
| ID | 8019828 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | - |
|---|
| Start bp | 2305310 |
|---|
| End bp | 2306326 |
|---|
| Gene Length | 1017 bp |
|---|
| Protein Length | 338 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644830948 |
|---|
| Product | porphobilinogen deaminase |
|---|
| Protein accession | YP_002982112 |
|---|
| Protein GI | 241663752 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0181] Porphobilinogen deaminase |
|---|
| TIGRFAM ID | [TIGR00212] porphobilinogen deaminase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.600756 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTTCCA ACGCCCGCCC GACTTCCCGT CAATCCCAGC TTGCTACGAC TCCTGCAGCC
CAGGCGCCGA CCAAGCTGGT CATCGCCTCG CGCGAAAGCC GGCTCGCCCT CTGGCAAGCC
GAACACGTGC GTGCTGCATT GCAAAAATAC TATCCCGCGT GCGACGTGTC CATCCTTGGA
ATGACCACGC GCGGCGACCA GATTCTCGAC CGCTCCCTCG CCAAGGTGGG GGGGAAAGGT
TTGTTCGTGA AGGAATTGGA GGTCGCGCTG GCCGAAGGGC GTGCCGATCT GGCCGTGCAT
TCGCTCAAGG ATGTGCCGAT GCAATTGCCG GAAGGCTTTG CGCTATCCAC CATTCTCGAA
CGCGAAGACC CGCGCGATGC CTTTGTTTCC AACGATTACG CCGATCTGGC CTCGCTGCCG
GCCGGCGCGG TCGTCGGTAC GTCCAGCCTG CGCCGCGAGG CATCGCTGCG GGCGCGGTTT
CCGCATCTGG TCATCCAACC GCTGCGGGGC AACCTCGATA CGCGTCTCGG CAAGCTTGAC
CGCGGCGACT ACGCCGCCAT CATCCTGGCC GCCGCCGGGC TCAGGCGCCT TGGGCTGGCT
GATCGCATCC GCTCGACCAT CGCGCCAGAA GAATCGCTAC CGGCAGCAGG GCAAGGCGCG
CTCGGCATTG AAATTCGCGC GGATCGTGAA GAGGTGCGCG CGTGCCTCGC GCCGCTGCAC
GATGCGCCGA CAGCGCTGGC TGTAACCGCC GAGCGCGCCG TTTCCCGCAT TCTGGGCGGT
TCATGCCAGG TGCCGCTGGC CGCGTTCGCG CAGTGGTCGG GCGCAGGCAC CTTGCGCCTG
CGTGCCTTTG TGGCGTCGCA GGACGGCACC CGCAAACTTG CCGCAGATGG CGAAGCCACG
CCATCCACGC TGGCCGATGC CGACGCGCTG GGTGTGCGCG TCGCGCAGCA GATGCTGGCA
GGCGGCGCAC GCGACATCCT CTCCATGCTG GGCGCCGACG CGCCACCCGC TACCTAA
|
|---|
| Protein sequence | MSSNARPTSR QSQLATTPAA QAPTKLVIAS RESRLALWQA EHVRAALQKY YPACDVSILG
MTTRGDQILD RSLAKVGGKG LFVKELEVAL AEGRADLAVH SLKDVPMQLP EGFALSTILE
REDPRDAFVS NDYADLASLP AGAVVGTSSL RREASLRARF PHLVIQPLRG NLDTRLGKLD
RGDYAAIILA AAGLRRLGLA DRIRSTIAPE ESLPAAGQGA LGIEIRADRE EVRACLAPLH
DAPTALAVTA ERAVSRILGG SCQVPLAAFA QWSGAGTLRL RAFVASQDGT RKLAADGEAT
PSTLADADAL GVRVAQQMLA GGARDILSML GADAPPAT
|
|---|
| |