| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_1493 |
|---|
| Symbol | |
|---|
| ID | 8019138 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | - |
|---|
| Start bp | 1576003 |
|---|
| End bp | 1577337 |
|---|
| Gene Length | 1335 bp |
|---|
| Protein Length | 444 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 644830271 |
|---|
| Product | inner-membrane translocator |
|---|
| Protein accession | YP_002981452 |
|---|
| Protein GI | 241663092 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4177] ABC-type branched-chain amino acid transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.530836 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.532886 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACGCA CCATGCACCA ACAAGCGCAA CAACAAGCCG CGCTGCCGGC CAACGATCGA
GCGCGGACGA TGAAATTCAA GCCGGTCAAT CTTGCCCGCT GGATGCTCTG GGGCACCACT
GCGCTGGTGA TGATCGTGCT GCCGCTCATC TGGCCGCAGG GTTTTGCCAT CACGCTGCTT
TCGCAGATGG GCATCATGAT CATCTTCGCG CTGTCGTACA ACATGCTGCT GGGGCAGTCC
GGCATGCTGT CGTTCGGGCA CGCGGTGTAT GCCGGCCTGG GCGCCTTCAT GGCCGTGCAC
CTGCTCAACA AGATCGGCGC CGTGCAGGCG CTGGGCATCG GCGGGCCGCT CGCCGTTGCG
CTGTTGCCGA TTGCCGGCGG CCTGGGCGGC GCGCTATTCG GCGTGATCTT CGGCTACGTC
ACCACCAAGA AGTCCGGCAC GACGTTCGCC ATGATCACGC TGGGTATCGG CGAGATGGTG
TTTGCCAGCG CGTTGATGTT TCCGGACTTC TTTGGCGGCG AGGGCGGTGT CTCCACGAAC
CGCAGCATCG GCGATGCCCT GGCCGGCGTC ACCTTCGGCC CGGCACGCCA GGTGTATTAC
CTGATCGCCG CGTGGTGCCT GATTTCAATG GCGCTGATGT ACGCCTGGAC GCAGACGCCG
CTGGGCCGTA TCGCCAACGC CGTGCGCGAC AACCCCGAGC GCGTGGAGTT CATCGGCTAC
AACACGCAGC GCGTGCGCTT CCTGGTAGTG ATTCTGTCGG CGTTCTTCGC TGGCATTGCC
GGCGCGCTGT CGTGCATCAA CTTCGAGATC GTGACGGCCG AGAACGTGTC GGCAGTGCGC
TCGGGCTCCG TGCTGCTGGC GGCGTTCATT GGCGGCATGG GCAGCTTCTT CGGGCCGATC
ATCGGCGCGG TGCTCACGGT GTTCTTCACC GTGGCGCTGT CGGGCATCAC CAAGGCGTGG
CTGCTGTACC TGGGGCTGTT CTTTGTGTTG ATGGTCATGT ACGCGCCGGG CGGAATCGCC
AGTCTTCTGG TCATGCATCT GCCGATCCTG CGGCGCGGCA AGCTCAAGAC GCTGCTCCCG
GCTTATGGCG TGGCGATCGT GCCGGCGGTC ATCCTGCTGG TCGCGTTGAT TTCCACCGTG
GAAATGATCT ACGCCGTGCA GGACGACGCC TCGGGTGGCG TGGCCACGCT GTTCGGCCTG
TCTGTCGAAC CGAATACCCT CAAGCCGTGG ATCGTCACCG CCGTGCTGTG GCTGGTGGGT
GCCTTCGGCC TGCGTGCCGC TGCGGGCAAG CTGCGCGCCG CTTGGGACAA CGCATTGCAG
GAGCCGCAAC CATGA
|
|---|
| Protein sequence | MERTMHQQAQ QQAALPANDR ARTMKFKPVN LARWMLWGTT ALVMIVLPLI WPQGFAITLL
SQMGIMIIFA LSYNMLLGQS GMLSFGHAVY AGLGAFMAVH LLNKIGAVQA LGIGGPLAVA
LLPIAGGLGG ALFGVIFGYV TTKKSGTTFA MITLGIGEMV FASALMFPDF FGGEGGVSTN
RSIGDALAGV TFGPARQVYY LIAAWCLISM ALMYAWTQTP LGRIANAVRD NPERVEFIGY
NTQRVRFLVV ILSAFFAGIA GALSCINFEI VTAENVSAVR SGSVLLAAFI GGMGSFFGPI
IGAVLTVFFT VALSGITKAW LLYLGLFFVL MVMYAPGGIA SLLVMHLPIL RRGKLKTLLP
AYGVAIVPAV ILLVALISTV EMIYAVQDDA SGGVATLFGL SVEPNTLKPW IVTAVLWLVG
AFGLRAAAGK LRAAWDNALQ EPQP
|
|---|
| |