| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_0546 |
|---|
| Symbol | |
|---|
| ID | 8018172 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | - |
|---|
| Start bp | 578066 |
|---|
| End bp | 579259 |
|---|
| Gene Length | 1194 bp |
|---|
| Protein Length | 397 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 644829325 |
|---|
| Product | response regulator receiver protein |
|---|
| Protein accession | YP_002980523 |
|---|
| Protein GI | 241662163 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4963] Flp pilus assembly protein, ATPase CpaE |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.257068 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.881145 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAAGA TCGCCCTCGT ATCCGCCGAC GAATCGCACC TGCAGCACCT GGCCGGGTTG
ATTACACAGG CCGCGAACCA TGTCGTGCAA CGCACGCGCG CCACGCCGTC TCAGGCACTG
ACTCGGCCTG ACCTCGGGCA AGGCAATGAC CTGTTGATCC TGGAAGCCAG CCGCTTCAGC
AGCGACGACC TCCAGCAACT GCGCCGCCTG TCCAGCGAGC ACCCCGAGAC ACTATGCATG
CTCCTGACCG AAGCACCGTC CGCAGACCTG CTGATGCGTG CCATGCGTGC CGGCGTGCAA
TGCGTGCTGC CGTGGCCGCC TGAAGCGCAG GAGTTTCGCG ACGAAGTGCA GCGTTGCACC
AGCCACGCAC TCTCCAGCTC GCACAATGAC GGGCAGGTGG TGTCGTTCCT TTCGTGCCGA
GGCGGCAGTG GCACGACATT CATCGCAGCC AACTTCGCCC ACGTGCTCAG CGCCCGCCAC
GGCAAGCGTG TGCTGCTGAT CGATCTCTGT CAGCAATACG GCGACGCCGC GTTCCTGCTC
ACCGATCAAT CGCCCCCCGC CACGCTGGCC AATGTGTGCA ATCAGATTGA TCGGCTCGAC
GCAGCCCTGC TCGACGCTTG TCTCACCCAC GTGTCGCAAG ACTTTGATGT GCTGGCCGGC
GCCGGAGACC CGATCAAGAG CGGCGAGATC AAGGCAACGC ACCTCGAGCG CATCCTCGCT
CTAGCCGCGT CAATGTATGA CGTGGTGGTC TTCGATGTTG GGCAGGACAT CAATCCGGCC
TCCATCGTCG TGCTCGATCA CAGCAACGTG ATCTACCCCG TGCTGCATCT CAGCCTCCCC
TATCTGCGCG CTGGCCGAAA ACTGATGGAG ATCTGCCATT CGTTGGGCTA TCGCGCAGAA
CGGCTGCGGC TGGTCATCAA TCAGTACGAC AAGCACATGC CCATCAGCCA AAACATGATG
GAGAGCGCCT TTGGCATGCC TGTAGCGCAC ATCCTGCCGT ACGACCCGGG GCCTGTGCGT
GACGCGACCA CGCAAGGCAT GCCGGTGCTG CAGCTGGCCG AGAACAGCCC GATCGCCCGC
GCGCTGGCAG ACATGGCGCG GCAACTGTTT CCGGGCTCAC AGCACCGGCG CGACGGGCTG
TTGCGCAAGC TCTTCCGACA CGCAAGCCAG GTGCCGGCCC CCGTTCGCGC TTAG
|
|---|
| Protein sequence | MAKIALVSAD ESHLQHLAGL ITQAANHVVQ RTRATPSQAL TRPDLGQGND LLILEASRFS
SDDLQQLRRL SSEHPETLCM LLTEAPSADL LMRAMRAGVQ CVLPWPPEAQ EFRDEVQRCT
SHALSSSHND GQVVSFLSCR GGSGTTFIAA NFAHVLSARH GKRVLLIDLC QQYGDAAFLL
TDQSPPATLA NVCNQIDRLD AALLDACLTH VSQDFDVLAG AGDPIKSGEI KATHLERILA
LAASMYDVVV FDVGQDINPA SIVVLDHSNV IYPVLHLSLP YLRAGRKLME ICHSLGYRAE
RLRLVINQYD KHMPISQNMM ESAFGMPVAH ILPYDPGPVR DATTQGMPVL QLAENSPIAR
ALADMARQLF PGSQHRRDGL LRKLFRHASQ VPAPVRA
|
|---|
| |