| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_0466 |
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| Symbol | |
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| ID | 8018092 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012856 |
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| Strand | + |
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| Start bp | 491010 |
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| End bp | 492779 |
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| Gene Length | 1770 bp |
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| Protein Length | 589 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 644829246 |
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| Product | O-antigen polymerase |
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| Protein accession | YP_002980444 |
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| Protein GI | 241662084 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3307] Lipid A core - O-antigen ligase and related enzymes |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.285163 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCCGCC CCCTCCCTTT GCTGCTGCCC CTCTGGCTCG CGATCGCCGC GTGCTGGTCC
GTTCCGTTCC TGATTGCGCC GCACACATAT CCGATTCCAA CGTTCTACGC TGAATATGCC
GCTGCAGTGT GCTGGGCTGC ACTGACACTC TGCGTGCTCG CGCTGACATG GGGTAGCAAG
GCCGGGTTCC CGGTTATCGT GACAGCGCCG CTAGCTTTGA TTGGTGCATT GGCCCTGCAG
TTGGTGGTCG CGCCACCGAT CAACACGTTC TTCTCGATCG CAGCGTCGGC ATTTCTTTTG
GCGGCCGTTG TTGCTACGTG GCTGGGGGCG CGATGTCGTG ACGTTCCGGG GGTCCTGGCG
GCCCTGGCAA TAGGTGTCAT CGTCGGGGGC ATGTTGACCG TGGCGGTGGA GCTGTTGCAC
CTGTTTCGTG TGCCGCGGCT TCCCAGTGCC TTCTTTTCGA TGACGCCGCT TGGTACGGGC
CGTCGCATGT GGGGCAACCT CAATCAGCCG AACCACGTCG GCTCCTATTT GGCGTTCGGG
CTTGCGGCTT GTGTCTTTGT TGCGCAGGAA TTCAAGCGCT GGCGTCTCGC GCTGGCGGTA
ATCGCAGTGA TCTTTCTACT GGGTATGGCG TTGACCATCT CCCGCGTTAC GTGGATGCAC
GTCGTTGTAG TCGGCGCGTT GGCGGGTCTG GCGTGGTCGG CCTCAGCACG AGGCCTGCGT
CGTTGGTTGG CGGTGGGCGC TTCTGTGCTG TTGCTCGTCG CTGTGTATGA AGCTTGCAAC
TGGTTCGTTT CGTATGCCAA TGTGCTTTGG CATCTGGATC TGCCGGGCTC CCTTGGAGAG
CGCATGCAGG AGGGTGTTGG TCCGCGTGCT GCTCTTTGGC AACACGCTTG GCATATGTTT
CTCGCGCATC CTTGGCTGGG TGGTGGCTGG GGCGATTACG CTTGGAACCA GTACGTGCAG
ACCGATCGGC TCGGCAACGT CGCGATGTCA TTGAATGCGC ACAACATCGT GCTGGACTTG
CTGGCCAAGG TCGGTCTGCT TGGCTTGTTT GCAGTGACGC TGCCGTTCCT CAGCTTTGCA
TGGAGCTTGC GAAAGCAGCC CATCACGCCC GCCCGGGCAT TTCTGCTCGC CATCATTCTG
GTATTGGCCG CGCACTCGAT GCTCGAGTAT CCGCTGCACT ACCTGTTCTT CTTGTTGCCT
CTGGCATTTG CGCTGGGCTA TTTGGATACA CGCACATTGC GTTTTGGTTC GGGCCGCATT
GCATGGGCGT CTACCGGAAT CGTGGCGTTG GGCGCCATCG CGTTGCTGAT GCAGCTCTGG
GGCGATTACG CGTCGGCTGA ACGCCTTCAA TACGGCTCCG CAAGCCAGCC CCCGCTGCTG
ACACGGGATC ACCAGCACGC CCCGACCTTG CTGTTGCCCT ATGAGAACGA GGCCATGGCT
AGCAGATGGA ATGTTGGTCC GGCAACGGCT GCGTCGCTTG TGACGCTTGA GCGCCAAGCT
GTGCAGTTCT ATCCTGGGCC CAGCACTGTC CAGCGCTACG CGTTGGCGCT TGCCTACCTG
GGCAAGACGG AGGAGGCCGT CATCCAAGTC CGCCGGTTGC ACAGCCACTA TTGGACCGAC
TACGCAGACC AGTCCTGGCT GCTCAAGCAG GCATGCGGGC AGAAGAGCGG CGATGCACTC
GAGACATTCT GCGTACGCCT CAAGTCCGAG AAACTGTTGG CGACAGCAGA TAACCCGTCC
GGCGGTGAAC CGTTAGCTGC ATCGAAATAA
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| Protein sequence | MSRPLPLLLP LWLAIAACWS VPFLIAPHTY PIPTFYAEYA AAVCWAALTL CVLALTWGSK
AGFPVIVTAP LALIGALALQ LVVAPPINTF FSIAASAFLL AAVVATWLGA RCRDVPGVLA
ALAIGVIVGG MLTVAVELLH LFRVPRLPSA FFSMTPLGTG RRMWGNLNQP NHVGSYLAFG
LAACVFVAQE FKRWRLALAV IAVIFLLGMA LTISRVTWMH VVVVGALAGL AWSASARGLR
RWLAVGASVL LLVAVYEACN WFVSYANVLW HLDLPGSLGE RMQEGVGPRA ALWQHAWHMF
LAHPWLGGGW GDYAWNQYVQ TDRLGNVAMS LNAHNIVLDL LAKVGLLGLF AVTLPFLSFA
WSLRKQPITP ARAFLLAIIL VLAAHSMLEY PLHYLFFLLP LAFALGYLDT RTLRFGSGRI
AWASTGIVAL GAIALLMQLW GDYASAERLQ YGSASQPPLL TRDHQHAPTL LLPYENEAMA
SRWNVGPATA ASLVTLERQA VQFYPGPSTV QRYALALAYL GKTEEAVIQV RRLHSHYWTD
YADQSWLLKQ ACGQKSGDAL ETFCVRLKSE KLLATADNPS GGEPLAASK
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